This folder contains supplementary information and data for the Animals paper:
Assessing two different aerial toxin treatments for management of invasive rats (Rattus rattus)
Tess O'Malley*, Margaret Stanley*, James Russell*
*University of Auckland

If you have any questions, please contact:
	Tess (Therese) O'Malley
	tess.omalley@auckland.ac.nz
	tessomalley@gmail.com

File List:

Supplementary_S1_FullModelList_TaranakiMarkRecapture.xlsx
	an excel sheet with the full list of models run and AIC outputs
Renvironment_allModels_TaranakiMarkRecapture.RData
	an R environment containing all models run, plus capthist and session covariates
RMarkdownCode_TaranakiMarkRecapture.Rmd
	an R Markdown file containing the code used in this study. Can be used in combination with the data files below to replicate results.
Captures_TaranakiRatMarkRecapture.txt
	Data file 1: rat caputures during mark-recapture sessions, used in SECR analysis to create the capthist file
TrapConfiguration_TaranakiMarkRecapture.txt
	Data file 2: configuration of traps during mark-recapture, used in SECR analysis to create the capthist file
SessionCovariates_TaranakiMarkRecapture.csv
	Data file 3: The session covariates, used in SECR analysis alonside capthist file to produce SECR models
FinalOutput_MarkRecapture_AbundanceIndex.csv
	Data file 4: final results, used for plotting and comparison of abundance indexes to density estimates
	Includes:
		-density, g0 and sigma estimates from the final model (CAPT.allSessions__D.post1080.location.p.dayssince1080.p.dayssinceSqrt_g0.dayssince1080.p.b.p.location.p.method_sigma.1)
		-abundance index values obtained during field work