13 10.73 6.67 0.00 Human_rDNA_Consensus_(Long)_IGS 44 73 (28822) (CGTC)n#Simple_repeat 1 32 (0) m_b1s252i0 1

  Human_rDNA_Co         44 CGTCCG-GCG-CCGTCCGTCCTTCCGTTCGTC 73
                                 -v  -          v     i    
  (CGTC)n#Simpl          1 CGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTC 32

Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.07 (2 / 29), avg. gap size = 1.00 (2 / 2)


34 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 891 922 (31643) (T)n#Simple_repeat 1 32 (0) c_b1s251i0 2

  Human_rDNA_Co        891 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 922
                                                           
  (T)n#Simple_r          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 31), avg. gap size = 0.0 (0 / 0)


21 8.35 5.13 0.00 Human_rDNA_Consensus_(Long)_IGS 923 961 (27965) (CTTT)n#Simple_repeat 1 41 (0) m_b1s252i1 3

  Human_rDNA_Co        923 CTTTCTTTCTTTCTTTTTCTCTTTCTTTC--TCTTTCCTTC 961
                                           i i          --      i   
  (CTTT)n#Simpl          1 CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC 41

Matrix = Unknown
Transitions / transversions = 1.00 (3/0)
Gap_init rate = 0.03 (1 / 38), avg. gap size = 2.00 (2 / 1)


110 3.20 2.29 0.75 Human_rDNA_Consensus_(Long)_IGS 962 1092 (31473) (CT)n#Simple_repeat 1 133 (0) c_b1s251i1 4

  Human_rDNA_Co        962 CTCT-TCTCTCTCTCTCTGCTCTCTC-CNC-CTCGCTCTCTCTCTCTCTC 1008
                               -             -       - ? -   v               
  (CT)n#Simple_          1 CTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 49

  Human_rDNA_Co       1009 TCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 1058
                                    v                                        
  (CT)n#Simple_         50 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 99

  Human_rDNA_Co       1059 TCTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTC 1092
                                          v     v            
  (CT)n#Simple_        100 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 133

Matrix = Unknown
Transitions / transversions = 0.00 (0/4)
Gap_init rate = 0.03 (4 / 130), avg. gap size = 1.00 (4 / 4)


15 8.35 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 1093 1121 (27935) (C)n#Simple_repeat 1 29 (0) m_b1s252i3 5

  Human_rDNA_Co       1093 CCCCCCTCCCCCCCCYCCYCNCCCCTCCC 1121
                                 i        ?  ? ?    i   
  (C)n#Simple_r          1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC 29

Matrix = Unknown
Transitions / transversions = 1.00 (2/0)
Gap_init rate = 0.00 (0 / 28), avg. gap size = 0.0 (0 / 0)


49 2.08 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 1564 1612 (30953) (TTTC)n#Simple_repeat 1 49 (0) c_b1s251i2 6

  Human_rDNA_Co       1564 TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTTCT 1612
                                                                  i         
  (TTTC)n#Simpl          1 TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT 49

Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.00 (0 / 48), avg. gap size = 0.0 (0 / 0)


88 5.26 0.81 0.81 Human_rDNA_Consensus_(Long)_IGS 1619 1741 (30824) (CT)n#Simple_repeat 1 123 (0) c_b1s251i3 7

  Human_rDNA_Co       1619 CTCTCGCTCTCTCTCTCNCTCGTCTCTTTCTCTCTCTCTCTCTCTCTCTC 1668
                                v           ?   -     i                      
  (CT)n#Simple_          1 CTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTC 49

  Human_rDNA_Co       1669 TCTCTCTCT-TCTCGCTCTYGCCCTCTCTCTCTCTCTYTCTCTCTGTCTC 1717
                                    -    v    ?v i              ?       v    
  (CT)n#Simple_         50 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 99

  Human_rDNA_Co       1718 TCTCTCTCTCTCTCTCTCTCTCTC 1741
                                                   
  (CT)n#Simple_        100 TCTCTCTCTCTCTCTCTCTCTCTC 123

Matrix = Unknown
Transitions / transversions = 0.50 (2/4)
Gap_init rate = 0.02 (2 / 122), avg. gap size = 1.00 (2 / 2)


31 0.00 0.00 3.03 Human_rDNA_Consensus_(Long)_IGS 2201 2234 (30331) (TTTC)n#Simple_repeat 1 33 (0) c_b1s251i4 8

  Human_rDNA_Co       2201 TTTCTTTCTTTCTTTCTTTTCTTTCTTTCTTTCT 2234
                                           -                 
  (TTTC)n#Simpl          1 TTTCTTTCTTTCTTTC-TTTCTTTCTTTCTTTCT 33

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.03 (1 / 33), avg. gap size = 1.00 (1 / 1)


34 2.76 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 2240 2277 (30288) (TC)n#Simple_repeat 1 38 (0) c_b1s251i5 9

  Human_rDNA_Co       2240 TCTCTCTYTCTCTCTCTCTCTCTCTCTCTGTCTCTCTC 2277
                                  ?                     v        
  (TC)n#Simple_          1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 38

Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.00 (0 / 37), avg. gap size = 0.0 (0 / 0)


601 11.46 8.06 1.52 Human_rDNA_Consensus_(Long)_IGS 2344 2467 (26829) C AluSx#SINE/Alu (177) 135 4 m_b1s357i0 10

  Human_rDNA_Co       2344 AAKTTTTCTATTY--AGNWAAGGCA---TTTCACCAT-TTNGGCGGGCTG 2387
                             ?    v    ?--  ??i  i i---         -  ? v i     
C AluSx#SINE/Al        135 AATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTG 86

  Human_rDNA_Co       2388 GT-TCGAACTCCCSACCCTAG-TGATCCGCCCGCCTCGGCCTCCCAAAGA 2435
                             -         i?   ii  -                           -
C AluSx#SINE/Al         85 GTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAG- 37

  Human_rDNA_Co       2436 CTGCTGGA--NACAGATGTGAGCCACCATGCCNG 2467
                           -      i--?    ii          ii   ? 
C AluSx#SINE/Al         36 -TGCTGGGATTACAGGCGTGAGCCACCGCGCCCG 4

Matrix = 18p53g.matrix
Kimura (with divCpGMod) = 9.90
Transitions / transversions = 6.00 (12/2)
Gap_init rate = 0.07 (8 / 123), avg. gap size = 1.50 (12 / 8)


41 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 2532 2566 (29999) (CA)n#Simple_repeat 1 35 (0) c_b1s251i6 11

  Human_rDNA_Co       2532 CACACACACACACACACACACACACACACACACAC 2566
                                                              
  (CA)n#Simple_          1 CACACACACACACACACACACACACACACACACAC 35

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 34), avg. gap size = 0.0 (0 / 0)


13 13.08 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 2686 2710 (26620) (TCCT)n#Simple_repeat 1 25 (0) m_b1s252i4 12

  Human_rDNA_Co       2686 TCCTTCCTCCCTTCCTTCATTCATT 2710
                                   i         v   v  
  (TCCT)n#Simpl          1 TCCTTCCTTCCTTCCTTCCTTCCTT 25

Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.00 (0 / 24), avg. gap size = 0.0 (0 / 0)


14 15.98 7.84 0.00 Human_rDNA_Consensus_(Long)_IGS 2701 2751 (26579) (TTTA)n#Simple_repeat 1 55 (0) m_b1s252i5 13

  Human_rDNA_Co       2701 TTCATTCA-TTATTTA-TTAATAATTT-TTMGTTTATTTATTT-TCTNTT 2746
                             i   i -       -   v v    -  ?i           - i ?  
  (TTTA)n#Simpl          1 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT 50

  Human_rDNA_Co       2747 TTTTT 2751
                            v   
  (TTTA)n#Simpl         51 TATTT 55

Matrix = Unknown
Transitions / transversions = 1.33 (4/3)
Gap_init rate = 0.08 (4 / 50), avg. gap size = 1.00 (4 / 4)


230 6.45 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 2794 2824 (26506) C 7SLRNA#SINE/Alu (269) 51 21 m_b1s502i0 14

  Human_rDNA_Co       2794 CCTCAGCCTCCCAAATAGCTGGGACTACAGG 2824
                                       i i                
C 7SLRNA#SINE/A         51 CCTCAGCCTCCCGAGTAGCTGGGACTACAGG 21

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 3.68
Transitions / transversions = 1.00 (2/0)
Gap_init rate = 0.00 (0 / 30), avg. gap size = 0.0 (0 / 0)


30 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 2896 2924 (29641) (GGTGG)n#Simple_repeat 1 29 (0) c_b1s251i7 15

  Human_rDNA_Co       2896 GGTGGGGTGGGGTGGGGTGGGGTGGGGTG 2924
                                                        
  (GGTGG)n#Simp          1 GGTGGGGTGGGGTGGGGTGGGGTGGGGTG 29

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 28), avg. gap size = 0.0 (0 / 0)


51 0.00 0.00 2.00 Human_rDNA_Consensus_(Long)_IGS 3057 3107 (29458) (TTCC)n#Simple_repeat 1 50 (0) c_b1s251i8 16

  Human_rDNA_Co       3057 TTCCTTCCTTCCTTCCTTCCTTCCTTYCCTTCCTTCCTTCCTTCCTTCCT 3106
                                                     -                       
  (TTCC)n#Simpl          1 TTCCTTCCTTCCTTCCTTCCTTCCTT-CCTTCCTTCCTTCCTTCCTTCCT 49

  Human_rDNA_Co       3107 T 3107
                            
  (TTCC)n#Simpl         50 T 50

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.02 (1 / 50), avg. gap size = 1.00 (1 / 1)


18 6.12 0.00 10.53 Human_rDNA_Consensus_(Long)_IGS 3283 3293 (26162) (GTAT)n#Simple_repeat 1 10 (28) m_b1s252i6 17

  Human_rDNA_Co       3283 GTAGGTATGTA 3293
                              v      -
  (GTAT)n#Simpl          1 GTATGTATGT- 10

Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.10 (1 / 10), avg. gap size = 1.00 (1 / 1)


52 0.00 2.08 0.00 Human_rDNA_Consensus_(Long)_IGS 3294 3341 (29224) (TG)n#Simple_repeat 1 49 (0) c_b1s251i9 18

  Human_rDNA_Co       3294 TGTGTGTGTGTGT-TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 3341
                                        -                                   
  (TG)n#Simple_          1 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 49

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.02 (1 / 47), avg. gap size = 1.00 (1 / 1)


18 6.12 0.00 10.53 Human_rDNA_Consensus_(Long)_IGS 3342 3371 (26084) (GTAT)n#Simple_repeat 11 38 (0) m_b1s252i6 19

  Human_rDNA_Co       3342 ATCTATGTATGTGCATGTATGTATGTATGT 3371
                             v         --                
  (GTAT)n#Simpl         11 ATGTATGTATGT--ATGTATGTATGTATGT 38

Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.07 (2 / 29), avg. gap size = 1.00 (2 / 2)


565 16.39 0.00 3.64 Human_rDNA_Consensus_(Long)_IGS 3388 3501 (25954) C AluJb#SINE/Alu (201) 111 2 m_b1s357i1 20

  Human_rDNA_Co       3388 GGGGTTCTATCATGTTGCCCACGCTGGTCTCGAACTCCTGTCCTCAAGCA 3437
                                 iiii           v                  vv       i
C AluJb#SINE/Al        111 GGGGTTTCGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCG 62

  Human_rDNA_Co       3438 ATCCGCCTGCCTGCCTCGGCCGCCCACACTGCTGCTATTACAGGCGTGAG 3487
                               ----?  i         v    v v     vv              
C AluJb#SINE/Al         61 ATCC----NCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAG 16

  Human_rDNA_Co       3488 GCGGYKCGCCTGGC 3501
                           v iv??    i   
C AluJb#SINE/Al         15 CCACCGCGCCCGGC 2

Matrix = 18p53g.matrix
Kimura (with divCpGMod) = 14.72
Transitions / transversions = 0.80 (8/10)
Gap_init rate = 0.04 (4 / 113), avg. gap size = 1.00 (4 / 4)


54 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 3514 3562 (29003) (TGCC)n#Simple_repeat 1 49 (0) c_b1s251i10 21

  Human_rDNA_Co       3514 TGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT 3562
                                                                            
  (TGCC)n#Simpl          1 TGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT 49

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 48), avg. gap size = 0.0 (0 / 0)


1057 17.81 1.65 2.50 Human_rDNA_Consensus_(Long)_IGS 3862 4103 (25400) C AluSx#SINE/Alu (4) 308 69 m_b1s356i0 22

  Human_rDNA_Co       3862 TTTTMGTTCTTTCTTTTTATTCTCTTTAGGCGG-GTTTCACTCTTGTCGC 3910
                               ?v  i   i     v  i i  v  i   -  i  i    -     
C AluSx#SINE/Al        308 TTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCT-GTCGC 260

  Human_rDNA_Co       3911 CCAGGGTGGAGTCACACGATGGCK--GTCTCTNGCTCACC-CCCCCTCCG 3957
                                v      ---i ii    ?--i    -?      i- vv      
C AluSx#SINE/Al        259 CCAGGCTGGAGT---GCAGTGGCGCGATCTC-GGCTCACTGCAACCTCCG 214

  Human_rDNA_Co       3958 CCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCCCGAGTAGCTGGA 4007
                                 i        i                   -             i
C AluSx#SINE/Al        213 CCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCT-CCCGAGTAGCTGGG 165

  Human_rDNA_Co       4008 ATGACAGAGATGAGCCATCGTGCCCGGCTAATTTTTCTATTTTTACTACA 4057
                             v    ivii v    i ii               v        v  v 
C AluSx#SINE/Al        164 ATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGA 115

  Human_rDNA_Co       4058 GATGGGGTTTCTCCATCTTGGTCAGGCTGGTCTTCAACTTCCGACC 4103
                             i        v    v    i           iv    i i    
C AluSx#SINE/Al        114 GACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACC 69

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 16.24
Transitions / transversions = 1.73 (26/15)
Gap_init rate = 0.04 (9 / 241), avg. gap size = 1.11 (10 / 9)


22 15.32 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 4134 4170 (25333) (T)n#Simple_repeat 1 37 (0) m_b1s252i8 23

  Human_rDNA_Co       4134 TTGTTTTCCTTTTTTTTTTTTTTTTTTTCTTTTCTTT 4170
                             v    ii                   i    i   
  (T)n#Simple_r          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37

Matrix = Unknown
Transitions / transversions = 4.00 (4/1)
Gap_init rate = 0.00 (0 / 36), avg. gap size = 0.0 (0 / 0)

15 20.14 0.00 2.70 Human_rDNA_Consensus_(Long)_IGS 4139 4176 (25327) (TTTC)n#Simple_repeat 1 37 (0) m_b1s252i9 23

  Human_rDNA_Co       4139 TTCCTTTTTTTTTTTTTTTTTTTCTTTTCTTTCCTTCT 4176
                             i    i   i   i   i    -        i    
  (TTTC)n#Simpl          1 TTTCTTTCTTTCTTTCTTTCTTTC-TTTCTTTCTTTCT 37

Matrix = Unknown
Transitions / transversions = 1.00 (6/0)
Gap_init rate = 0.03 (1 / 37), avg. gap size = 1.00 (1 / 1)


32 2.32 4.35 2.13 Human_rDNA_Consensus_(Long)_IGS 4201 4246 (28319) (TCC)n#Simple_repeat 1 47 (0) c_b1s251i11 24

  Human_rDNA_Co       4201 TCCTCCTCCCCCTCCTCCTCCTCC-CC-CCTCCTCCTCCTCCCTCCTC 4246
                                    i              -  -            -       
  (TCC)n#Simple          1 TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT-CCTCCTC 47

Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.07 (3 / 45), avg. gap size = 1.00 (3 / 3)


60 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 5169 5219 (27346) (TC)n#Simple_repeat 1 51 (0) c_b1s251i12 25

  Human_rDNA_Co       5169 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 5218
                                                                             
  (TC)n#Simple_          1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50

  Human_rDNA_Co       5219 T 5219
                            
  (TC)n#Simple_         51 T 51

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 50), avg. gap size = 0.0 (0 / 0)


692 23.06 5.36 2.43 Human_rDNA_Consensus_(Long)_IGS 5369 5648 (23950) AluSx#SINE/Alu 3 290 (22) m_b1s357i2 26

  Human_rDNA_Co       5369 CTGGGCGGACNGCTAGCTC-CGCCTGTCACTCCGGCACTTTGGGAGG-CG 5416
                            i     ---? v i    -       v ii  i             -  
  AluSx#SINE/Al          3 CCGGGCG---CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCG 49

  Human_rDNA_Co       5417 GGGCGGGTGGATGCAGCTGGGG-CGGGAGTT-GA-ACCAGGCTGGCCGGC 5463
                           i      i    -  v   i  - i      -  -     v      ii 
  AluSx#SINE/Al         50 AGGCGGGCGGAT-CACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAC 98

  Human_rDNA_Co       5464 --GGTGDGAAACCCGTCTCTCTGAAAAATAGAGCGATTAG-CGGGCCTGG 5510
                           --    -i  v         viv       v ivi     -     v   
  AluSx#SINE/Al         99 ATGGTG-AAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGG 147

  Human_rDNA_Co       5511 TGGCGTGGGCTTGGAATCCACGACCTTTCGGG-GAMTGGGGC-GGCGACT 5558
                                i v  i  v     - ii ivi     - i?  i   -  v  v 
  AluSx#SINE/Al        148 TGGCGCGCGCCTGTAATCC-CAGCTACTCGGGAGGCTGAGGCAGGAGAAT 196

  Human_rDNA_Co       5559 TGTTCCAA-CSGGGGGGNCGAGGTTGCGATGAGCTGAG---GTGCCGTGG 5604
                           i i iv  - ?   i  ?v        ii     i   --- i   iiv 
  AluSx#SINE/Al        197 CGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTG 246

  Human_rDNA_Co       5605 CGATGYGGCCTGGATGCNGGGGGCGAGAC-CCGTCTCGRAGAGAA 5648
                            iv v?i      ii v?-i i       -       i? i i  
  AluSx#SINE/Al        247 CACTCCAGCCTGGGCGAC-AGAGCGAGACTCCGTCTCAAAAAAAA 290

Matrix = 18p53g.matrix
Kimura (with divCpGMod) = 25.63
Transitions / transversions = 2.00 (42/21)
Gap_init rate = 0.07 (19 / 279), avg. gap size = 1.16 (22 / 19)


257 23.70 1.27 3.90 Human_rDNA_Consensus_(Long)_IGS 5679 5757 (23841) 7SLRNA#SINE/Alu 8 84 (236) m_b1s502i1 27

  Human_rDNA_Co       5679 GCGGTGATG-GCGCCTGTAGTNGTGACTACTGGGGAGGCTGAGGCGAGGA 5727
                                 ii -           ?viii     v             --- i
  7SLRNA#SINE/A          8 GCGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGC---GG 54

  Human_rDNA_Co       5728 GAAGATCACTTAGGCCCCACAGGTCGAGGC 5757
                             i    i   ii    viv  v  vi   
  7SLRNA#SINE/A         55 GAGGATCGCTTGAGCCCAGGAGTTCTGGGC 84

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 26.05
Transitions / transversions = 2.00 (12/6)
Gap_init rate = 0.05 (4 / 78), avg. gap size = 1.00 (4 / 4)


63 21.45 2.96 1.16 Human_rDNA_Consensus_(Long)_IGS 5826 5994 (23604) (TTTC)n#Simple_repeat 1 172 (0) m_b1s252i10 28

  Human_rDNA_Co       5826 TTTCTTTTCTTCCCTTCTCT-TTTC-TTCTTTTTTTGCTTCTCT-TTTTT 5872
                               -      i i    i -    -      i   vi    i -   i 
  (TTTC)n#Simpl          1 TTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT 49

  Human_rDNA_Co       5873 TTYTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTCTCT 5922
                             ?                               i   i   i     i 
  (TTTC)n#Simpl         50 TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT 99

  Human_rDNA_Co       5923 CTTNCCCTCTTTCTTTCCTGCCTTCCTGCCTTTC-TTCTTTTCTTCTTTC 5971
                              ? ii         -  vi   i  vi     -      ii       
  (TTTC)n#Simpl        100 CTTTCTTTCTTTCTTT-CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC 148

  Human_rDNA_Co       5972 -CCCCTTCCCCCCTTCCTTCTTTC 5994
                           -ii i   iii i   i       
  (TTTC)n#Simpl        149 TTTCTTTCTTTCTTTCTTTCTTTC 172

Matrix = Unknown
Transitions / transversions = 8.67 (26/3)
Gap_init rate = 0.04 (7 / 168), avg. gap size = 1.00 (7 / 7)


225 19.56 1.28 8.22 Human_rDNA_Consensus_(Long)_IGS 6184 6261 (23337) C 7SLRNA#SINE/Alu (244) 76 4 m_b1s502i2 29

  Human_rDNA_Co       6184 CTCCTGGACTCG-GCGATCCTTCCACCTCAGCCTCCAGAGTACAGAGCCC 6232
                                  i   i-        i  i           v    ----   i-
C 7SLRNA#SINE/A         76 CTCCTGGGCTCAAGCGATCCTCCCGCCTCAGCCTCCCGAGT----AGCT- 32

  Human_rDNA_Co       6233 GGGGACGGCGAGNCAGCGCCACTGTGCCC 6261
                           -     vi ii ?vv       i i    
C 7SLRNA#SINE/A         31 -GGGACTACAGGCGCGCGCCACCGCGCCC 4

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 18.18
Transitions / transversions = 2.50 (10/4)
Gap_init rate = 0.09 (7 / 77), avg. gap size = 1.00 (7 / 7)


1287 17.97 2.68 1.32 Human_rDNA_Consensus_(Long)_IGS 6268 6566 (25120) C AluSx#SINE/Alu (9) 303 1 c_b1s352i0 30

  Human_rDNA_Co       6268 TTTTTAATTGTTTTTTTCCCCGAGACAGAGTTTCACTCTGGTGGCCTGAA 6317
                                vv  v       iiii     i    i  i     - v   iiii
C AluSx#SINE/Al        303 TTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTG-TCGCCCAGG 255

  Human_rDNA_Co       6318 CTGCAGTCGCGGTGGTGGCGATCTTGGCTCAC-GCAACCTCTGCCTCCCG 6366
                              v   -  i    i -      i       -        i        
C AluSx#SINE/Al        254 CTGGAGT-GCAGTGGCG-CGATCTCGGCTCACTGCAACCTCCGCCTCCCG 207

  Human_rDNA_Co       6367 GTTTCA-GCGATTCTCCTGCATCGGCCTCCTGAGTAGCGGGATTTGCGGG 6415
                            v    -             v  i      i       v  iv  i i  
C AluSx#SINE/Al        206 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGG 157

  Human_rDNA_Co       6416 CATCT--TGCCACGTCTGGCTGATTTC-GTATTTTTTAGTGGAAGCGGGG 6462
                            iivi--ii     i i    i    i-        -   i  ii     
C AluSx#SINE/Al        156 CGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTT-AGTAGAGACGGGG 108

  Human_rDNA_Co       6463 CTTCTCCATGTCGTCSGGGCTGGTTT-GAACTCC-GACCTCAGGTGATCC 6510
                           i   v      i v ?i       i -       -               
C AluSx#SINE/Al        107 TTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCC 58

  Human_rDNA_Co       6511 GCCCTCC-CGGCCTCCGGAAGTGCTGGGATGACAGGCGTGAGCCACANCG 6559
                               v  -        vi            v               v?  
C AluSx#SINE/Al         57 GCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCG 8

  Human_rDNA_Co       6560 CCCGGCC 6566
                                  
C AluSx#SINE/Al          7 CCCGGCC 1

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 16.99
Transitions / transversions = 2.31 (37/16)
Gap_init rate = 0.04 (11 / 298), avg. gap size = 1.09 (12 / 11)


57 0.00 0.00 1.82 Human_rDNA_Consensus_(Long)_IGS 6715 6770 (25795) (CTTT)n#Simple_repeat 1 55 (0) c_b1s251i13 31

  Human_rDNA_Co       6715 CTTTCTTTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC 6764
                                        -                                    
  (CTTT)n#Simpl          1 CTTTCTTTCTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC 49

  Human_rDNA_Co       6765 TTTCTT 6770
                                 
  (CTTT)n#Simpl         50 TTTCTT 55

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.02 (1 / 55), avg. gap size = 1.00 (1 / 1)


12 9.24 0.00 4.17 Human_rDNA_Consensus_(Long)_IGS 7143 7167 (22784) (TCTT)n#Simple_repeat 1 24 (0) m_b1s252i11 32

  Human_rDNA_Co       7143 TCTTACTTTCATTTCTTCCTTTCTT 7167
                               v     -      i       
  (TCTT)n#Simpl          1 TCTTTCTTTC-TTTCTTTCTTTCTT 24

Matrix = Unknown
Transitions / transversions = 1.00 (1/1)
Gap_init rate = 0.04 (1 / 24), avg. gap size = 1.00 (1 / 1)


18 17.53 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 7204 7235 (22716) (G)n#Simple_repeat 1 32 (0) m_b1s252i12 33

  Human_rDNA_Co       7204 GGGGGGGGGGTGCGGGGGGGGGACGGAGGGGG 7235
                                     v v         iv  i     
  (G)n#Simple_r          1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 32

Matrix = Unknown
Transitions / transversions = 0.67 (2/3)
Gap_init rate = 0.00 (0 / 31), avg. gap size = 0.0 (0 / 0)


14 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 7270 7287 (22664) (CAC)n#Simple_repeat 1 18 (0) m_b1s252i13 34

  Human_rDNA_Co       7270 CACCACCACCACCACCAC 7287
                                             
  (CAC)n#Simple          1 CACCACCACCACCACCAC 18

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 17), avg. gap size = 0.0 (0 / 0)


601 27.28 0.75 5.95 Human_rDNA_Consensus_(Long)_IGS 7309 7573 (22378) L1PREC2_3end#LINE/L1 647 898 (9) m_b1s551i0 35

  Human_rDNA_Co       7309 CTAAATACAGCGTGTTCTCATCTAGAAGTGGGAACTTACAGATGACAGTT 7358
                            i      v  i        ii  v        i  v vv     v ii?
  L1PREC2_3end#        647 CCAAATACCGCATGTTCTCACTTATAAGTGGGAGCTAAATGATGAGAACN 696

  Human_rDNA_Co       7359 CTTGCATGGGCAGAGCRRGGGGNSSRGGGRGGGCGGAAGTCTGCTTGAGG 7408
                            ----    i  v iv??    ????ivi?ivi v ii i  i       
  L1PREC2_3end#        697 C----ATGGACACAAAGAGGGGAACAACAGACACTGGGGCCTACTTGAGG 742

  Human_rDNA_Co       7409 GAGGAGGGTGGAAGGAGAACAGCTTCRGGAAAAAAAAAAAACCCGAATAC 7458
                            v         i     ii-  ----?   ?v i      vv------  
  L1PREC2_3end#        743 GTGGAGGGTGGGAGGAGGG-AG----AGGANCAGAAAAAATA------AC 781

  Human_rDNA_Co       7459 TGTCGGACACAGCACTGACTACC-GGGTGATGAAATCATCTGCACACTGA 7507
                            i i  ii  vivi  v v    -      i     v     i   vii 
  L1PREC2_3end#        782 TATTGGGTACTAGGCTTAGTACCTGGGTGACGAAATAATCTGTACAACAA 831

  Human_rDNA_Co       7508 ACACCCS-GTCACAANTTTACCTATGTCACAATCTTGCACATGTATGCTT 7556
                             v   ?- v   i ?         i v    v i          iv i 
  L1PREC2_3end#        832 ACCCCCGTGACACGAGTTTACCTATATAACAAACCTGCACATGTACCCCT 881

  Human_rDNA_Co       7557 GAGCGACAAATAAAAAT 7573
                             i vvv        i 
  L1PREC2_3end#        882 GAACCTAAAATAAAAGT 898

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 34.74
Transitions / transversions = 1.31 (38/29)
Gap_init rate = 0.06 (17 / 264), avg. gap size = 1.00 (17 / 17)


39 3.95 1.85 1.85 Human_rDNA_Consensus_(Long)_IGS 7579 7632 (22319) (GA)n#Simple_repeat 1 54 (0) m_b1s252i14 36

  Human_rDNA_Co       7579 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGA-AGAGAGRAGGG 7627
                                                             v   -      -  i 
  (GA)n#Simple_          1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-AGAG 49

  Human_rDNA_Co       7628 AGAGA 7632
                                
  (GA)n#Simple_         50 AGAGA 54

Matrix = Unknown
Transitions / transversions = 1.00 (1/1)
Gap_init rate = 0.04 (2 / 53), avg. gap size = 1.00 (2 / 2)


31 3.03 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 7720 7753 (24812) (T)n#Simple_repeat 1 34 (0) c_b1s251i14 37

  Human_rDNA_Co       7720 TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTT 7753
                                       i                     
  (T)n#Simple_r          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34

Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.00 (0 / 33), avg. gap size = 0.0 (0 / 0)

1093 15.00 6.95 2.21 Human_rDNA_Consensus_(Long)_IGS 7754 8008 (21976) C AluSx#SINE/Alu (30) 282 16 m_b1s356i1 37

  Human_rDNA_Co       7754 GGACTGAGTCTCTCTGCTCTGTCACCCAGGCTGCDGTYT-TGGTGG-GCT 7801
                           i   v       ---        i         -- v? -ii    -  v
C AluSx#SINE/Al        282 AGACGGAGTCTC---GCTCTGTCGCCCAGGCTG--GAGTGCAGTGGCGCG 238

  Human_rDNA_Co       7802 CTCTCGGCTCACTGAAACCTCTGCTTCC-GGGTTCCAGTGATTCTTCT-- 7848
                           v             v      i  i   -      v  i      i  --
C AluSx#SINE/Al        237 ATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGC 188

  Human_rDNA_Co       7849 ---------TCG-GTAGCTGGGATTACAGGCNCAC---ACCATGNGCGGC 7885
                           ---------i  -                  ? i ---    i ?v    
C AluSx#SINE/Al        187 CTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGC 138

  Human_rDNA_Co       7886 TCATATTCCTATTTTCAGTAGAGRCGGGTTTTCTCCACGTTGGCCACGCT 7935
                            v  v  iv      i       ?    v    v   i        v   
C AluSx#SINE/Al        137 TAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCT 88

  Human_rDNA_Co       7936 GGTCTCGAACTCCTGACCTCAAATGATCCGCCTTCCTGGGCCTCCCAAAG 7985
                                                ii         iv   v            
C AluSx#SINE/Al         87 GGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAG 38

  Human_rDNA_Co       7986 TGCTGGAAGCGACAGGCCTGRGC 8008
                                 i -iv      v  ?  
C AluSx#SINE/Al         37 TGCTGGGA-TTACAGGCGTGAGC 16

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 14.06
Transitions / transversions = 1.12 (19/17)
Gap_init rate = 0.05 (13 / 254), avg. gap size = 1.85 (24 / 13)


33 2.68 0.00 2.56 Human_rDNA_Consensus_(Long)_IGS 8177 8216 (24349) (TAAC)n#Simple_repeat 1 39 (0) c_b1s251i15 38

  Human_rDNA_Co       8177 TAACTAACTAACAAACTAACTAACTAACTAAACTAACTAA 8216
                                       v                -          
  (TAAC)n#Simpl          1 TAACTAACTAACTAACTAACTAACTAACT-AACTAACTAA 39

Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.03 (1 / 39), avg. gap size = 1.00 (1 / 1)


980 14.00 1.48 10.04 Human_rDNA_Consensus_(Long)_IGS 8317 8548 (21546) AluSx#SINE/Alu 64 281 (31) m_b1s356i2 39

  Human_rDNA_Co       8317 CCCGAGGTCAGGAGTT-GAGACCAGCCNR-CCAGCGTGGKGAAAACCCGT 8364
                             i             -          ??-   i i   ?    v     
  AluSx#SINE/Al         64 CCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGT 113

  Human_rDNA_Co       8365 CTCTACTGAAAAWTCGGAAATGGAGTCAGGCGCCCGTGG-GGCAGGCACC 8413
                                  i    ?v ii    v-  i i    ----   -   iv  i  
  AluSx#SINE/Al        114 CTCTACTAAAAATACAAAAATT-AGCCGGGCG----TGGTGGCGCGCGCC 158

  Human_rDNA_Co       8414 TGTAACCCCAGCTACTCGGGAGGCTGGGNGYGGAAGAAT-KCCCGAACCT 8462
                                i                    i - ?i i     -? ii     i
  AluSx#SINE/Al        159 TGTAATCCCAGCTACTCGGGAGGCTGAG-GCAGGAGAATCGCTTGAACCC 207

  Human_rDNA_Co       8463 GGCAGTGGGGGGYTGCAGTGACCCAAGATGGCACCACTGCACTACAGCCT 8512
                             v  vv  i  ?        v  i    v  i          v      
  AluSx#SINE/Al        208 GGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT 257

  Human_rDNA_Co       8513 GGGCKGACMAGAGTGAGACCCGGTCTCCAGATAAAT 8548
                               -   -    i     i v    ----------
  AluSx#SINE/Al        258 GGGC-GAC-AGAGCGAGACTCCGTCT---------- 281

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 12.87
Transitions / transversions = 2.00 (22/11)
Gap_init rate = 0.10 (22 / 231), avg. gap size = 1.00 (22 / 22)


39 6.31 0.00 2.86 Human_rDNA_Consensus_(Long)_IGS 8549 8620 (23945) (CATA)n#Simple_repeat 1 70 (0) c_b1s251i16 40

  Human_rDNA_Co       8549 CATACATAAATAAATACATACATACNCANACATACATACATACATACANA 8598
                                   v   v           --  ?                   ? 
  (CATA)n#Simpl          1 CATACATACATACATACATACATA--CATACATACATACATACATACATA 48

  Human_rDNA_Co       8599 CATACATACATCCATGCATACA 8620
                                      v   i      
  (CATA)n#Simpl         49 CATACATACATACATACATACA 70

Matrix = Unknown
Transitions / transversions = 0.33 (1/3)
Gap_init rate = 0.03 (2 / 71), avg. gap size = 1.00 (2 / 2)


980 14.00 1.48 10.04 Human_rDNA_Consensus_(Long)_IGS 8621 8657 (21437) AluSx#SINE/Alu 282 312 (0) m_b1s356i2 39

  Human_rDNA_Co       8621 GATATACAAGAAAAANNAAAAAAAAAAAAAAAAAAAA 8657
                           ------   i     ??                    
  AluSx#SINE/Al        282 ------CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 312

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 12.87
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.17 (6 / 36), avg. gap size = 1.00 (6 / 6)


310 19.76 1.56 7.73 Human_rDNA_Consensus_(Long)_IGS 8663 8854 (21240) C HERV17#LTR/ERV1 (7744) 882 702 m_b1s701i0 41

  Human_rDNA_Co       8663 AAAAGAA-AAGGCACTGTATTGCTACTGGGCTAGGGCCTTCTCTCTGTCT 8711
                              i   - i     vv i  vi v  vvi   ----i    ?   v i 
C HERV17#LTR/ER        882 AAAGGAATAGGGCACACTGTTTTTTCTTTACTA----TTTCTNTCTCTTT 837

  Human_rDNA_Co       8712 GTTTCTCTCTGTNTAAGTCTCTGTCTTTC-TCTCTGTGTCTCTTTCTCTG 8760
                           v         --? i v     v   i  -       v     i     -
C HERV17#LTR/ER        836 CTTTCTCTCT--TTGACTCTCTCTCTCTCCTCTCTGTCTCTCTCTCTCT- 790

  Human_rDNA_Co       8761 TCTGTCTGTCTCTT-TCTCTCTCTCTGTCTCTGTCTCTGTCTTTCTCTCT 8809
                             i    v    i -          i-           v   i      -
C HERV17#LTR/ER        789 TCCGTCTCTCTCCTGTCTCTCTCTCC-TCTCTGTCTCTCTCTCTCTCTC- 742

  Human_rDNA_Co       8810 CTCTCTCCCTCTCTGCCTGTCTCACTGTGTCTGTCTTCTGTCTTA 8854
                           ----    v     vi  v    -  v     v    i v     
C HERV17#LTR/ER        741 ----CTCCGTCTCTCTCTCTCTC-CTCTGTCTCTCTTTTCTCTTA 702

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 22.47
Transitions / transversions = 0.84 (16/19)
Gap_init rate = 0.09 (17 / 191), avg. gap size = 1.00 (17 / 17)


231 21.13 4.43 3.29 Human_rDNA_Consensus_(Long)_IGS 8873 9062 (21262) (TCTGTC)n#Simple_repeat 1 192 (1177) m_b1s252i15 42

  Human_rDNA_Co       8873 TCTGTCTCTCTCTCTCTCCCTCNC-CTGTCTGTTTCTCTCTCTCTCTTTT 8921
                                    v     v  i  v? -      v v     v     -v i 
  (TCTGTC)n#Sim          1 TCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT-GTCT 49

  Human_rDNA_Co       8922 CTGTCT-T-TCTMTGCTCTCTCTGTCTGTCTATCTCTTTTCTGTCTGTCT 8969
                                 - -   ?  -     v v       v v  - i v v       
  (TCTGTC)n#Sim         50 CTGTCTCTGTCTCTG-TCTCTGTCTCTGTCTCTGTC-TCTGTCTCTGTCT 97

  Human_rDNA_Co       8970 CTCTCTCTNT-TCTGTCTC-GTSTCTTTTCTCTCTGTCCGTSTCTG--TC 9015
                             v     ? -        -  ?  - v     v v  i  ?    --  
  (TCTGTC)n#Sim         98 CTGTCTCTGTCTCTGTCTCTGTCTC-TGTCTCTGTCTCTGTCTCTGTCTC 146

  Human_rDNA_Co       9016 TGTC-CTCTCTYTCTRTCTGTCTGTGTCTCTATCYCCTCMYCYCCCTA 9062
                               -  v   ? v ?       v       i  -i  -?? ? iv v
  (TCTGTC)n#Sim        147 TGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTC-TCT-GTCTCTGTC 192

Matrix = Unknown
Transitions / transversions = 0.32 (7/22)
Gap_init rate = 0.07 (13 / 189), avg. gap size = 1.08 (14 / 13)


26 5.76 0.00 3.39 Human_rDNA_Consensus_(Long)_IGS 9063 9123 (23442) (TCTGTCTC)n#Simple_repeat 1 59 (0) c_b1s251i17 43

  Human_rDNA_Co       9063 TCTGTTCTCTCTGTCTCKCTATCTCTCCTGTCTCTCTCTSTCTCTMTCTG 9112
                               -            ?  i     -          v ?     ?   v
  (TCTGTCTC)n#S          1 TCTG-TCTCTCTGTCTCTCTGTCTCT-CTGTCTCTCTGTCTCTCTGTCTC 48

  Human_rDNA_Co       9113 TCTGTCTCTCT 9123
                                      
  (TCTGTCTC)n#S         49 TCTGTCTCTCT 59

Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.03 (2 / 60), avg. gap size = 1.00 (2 / 2)


231 21.13 4.43 3.29 Human_rDNA_Consensus_(Long)_IGS 9124 9198 (21126) (TCTGTC)n#Simple_repeat 193 267 (1102) m_b1s252i15 44

  Human_rDNA_Co       9124 CNTNNNNNNTGTVT-TATCTGTCYTCYCTCTCTSTCTTCHCTTTYCGTCC 9172
                            ?v?????? v ? - v      -  ?v     ?  -  ?v i ?i   i
  (TCTGTC)n#Sim        193 CTGTCTCTGTCTCTGTCTCTGTC-TCTGTCTCTGTC-TCTGTCTCTGTCT 240

  Human_rDNA_Co       9173 NTNTCTCTATGTCT-TCTCYCTATCTA 9198
                           ? ?     i v   -    ?v v   i
  (TCTGTC)n#Sim        241 CTGTCTCTGTCTCTGTCTCTGTCTCTG 267

Matrix = Unknown
Transitions / transversions = 0.62 (5/8)
Gap_init rate = 0.05 (4 / 74), avg. gap size = 1.00 (4 / 4)


32 7.75 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 9199 9239 (23326) (TC)n#Simple_repeat 1 41 (0) c_b1s251i18 45

  Human_rDNA_Co       9199 TCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTGTCTCTCTCT 9239
                                                  v   v   v         
  (TC)n#Simple_          1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 41

Matrix = Unknown
Transitions / transversions = 0.00 (0/3)
Gap_init rate = 0.00 (0 / 40), avg. gap size = 0.0 (0 / 0)


231 21.13 4.43 3.29 Human_rDNA_Consensus_(Long)_IGS 9240 9786 (20538) (TCTGTC)n#Simple_repeat 268 817 (552) m_b1s252i15 46

  Human_rDNA_Co       9240 GTGTGTCTCTGTCT-T-TC-CTGTCTCTTTSCGTGCCTCTCTGTCTGTCT 9286
                           v v           - -  -        v - - viv         v v 
  (TCTGTC)n#Sim        268 CTCTGTCTCTGTCTCTGTCTCTGTCTCTGT-C-TCTGTCTCTGTCTCTGT 315

  Human_rDNA_Co       9287 ATCTGTCTCTGTCTCCTGYC-CTG-CT-TTTMTGTCTYTCTATCTCCGTT 9333
                           v             -   ? -   -  - v ? v v ?   i    i - 
  (TCTGTC)n#Sim        316 CTCTGTCTCTGTCT-CTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTG-T 363

  Human_rDNA_Co       9334 STCTGTCTCT-CCTSTCTYTCTMTNNCNCTCTCTTTCTGTCCTCATCCGT 9382
                           ?         -i  ? v ?   ? ?? ?v     v   v -v  -  i  
  (TCTGTC)n#Sim        364 CTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT-GTC-TCTGT 411

  Human_rDNA_Co       9383 CTCTGYCTCTCCGTCTRTCTATCTCTYTCCCTNYCTCTGTCTC-GTCCTC 9431
                                --    i   --   i     ?  i  ??         -  -   
  (TCTGTC)n#Sim        412 CTCTG--TCTCTGTC--TCTGTCTCTGTCTCTGTCTCTGTCTCTGT-CTC 456

  Human_rDNA_Co       9432 TCTGTCTGTCTC--TSTCTGT-TCTGTYHMCGYGTCTGTCTANYNCT-TC 9477
                            v v        -- ?     -     ???i ?v       v???  - v
  (TCTGTC)n#Sim        457 TGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTG 506

  Human_rDNA_Co       9478 NTTCTCTCTCTSTCTCCG-CTGTNATANNCTGTTTAYCT-TCTGTCTBCT 9525
                           ?i   v     ?    i -  v -i -??    i v?v -       -  
  (TCTGTC)n#Sim        507 TCTCTGTCTCTGTCTCTGTCTCT-GT-CTCTGTCTCTGTCTCTGTCT-CT 553

  Human_rDNA_Co       9526 TTCTCTGTCT-GNTCTCTCTCNCTCTCTCTGYC-CTTTCTCTTTCTCTHT 9573
                           v         -v?     v  ?  v      ? -  v     v     ? 
  (TCTGTC)n#Sim        554 GTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGT 603

  Human_rDNA_Co       9574 CTGTYTCTCTCTKCCTGTGT-TCT-TCT-NCTNTTTCTCTGTCCTCTGNC 9620
                             v ?     v ?i    v - v -   -?  ? v       -     ? 
  (TCTGTC)n#Sim        604 CTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGT-CTCTGTC 652

  Human_rDNA_Co       9621 -C-GTCCTCYGTCT-TTTKTCATGTCTCTGTCTCTNTCTATCT-TCTATC 9666
                           - -  -   ?    - v ?  -             ?   v v -   i  
  (TCTGTC)n#Sim        653 TCTGT-CTCTGTCTCTGTCTC-TGTCTCTGTCTCTGTCTCTGTCTCTGTC 700

  Human_rDNA_Co       9667 T-T-CCTCTGTTTCTCTTCCTGCCTATCTGTCYATCTCTCTNTNTCTCCG 9714
                            - -i      i   v ii   -- v      --   v   ? ?    i 
  (TCTGTC)n#Sim        701 TCTGTCTCTGTCTCTGTCTCTG--TCTCTGTC--TCTGTCTCTGTCTCTG 746

  Human_rDNA_Co       9715 TCTCTCTCTTTCTGTCTGT-T-TCTCTRTSTCTCTGTCCATCNTGTCT-T 9761
                                v   i v v     - - v   ? ?       - -  -     - 
  (TCTGTC)n#Sim        747 TCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGT-C-TC-TGTCTCT 793

  Human_rDNA_Co       9762 -TCTCTGTCTGTCTCTCTTTTCCCTR 9786
                           -         v v    - v  i  -
  (TCTGTC)n#Sim        794 GTCTCTGTCTCTGTCTC-TGTCTCT- 817

Matrix = Unknown
Transitions / transversions = 0.45 (22/49)
Gap_init rate = 0.10 (54 / 546), avg. gap size = 1.02 (55 / 54)


26 0.00 0.00 3.03 Human_rDNA_Consensus_(Long)_IGS 9787 9820 (22745) (TCTCTG)n#Simple_repeat 1 33 (0) c_b1s251i19 47

  Human_rDNA_Co       9787 TCTCTGTCTCTGYCTCTGTCCTCTGTCTCTGTCT 9820
                                       ?      -              
  (TCTCTG)n#Sim          1 TCTCTGTCTCTGTCTCTGT-CTCTGTCTCTGTCT 33

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.03 (1 / 33), avg. gap size = 1.00 (1 / 1)


231 21.13 4.43 3.29 Human_rDNA_Consensus_(Long)_IGS 9821 9975 (20349) (TCTGTC)n#Simple_repeat 818 976 (393) m_b1s252i15 48

  Human_rDNA_Co       9821 ATCTCTCTCGCGTGTCTTTNCCTCTGTCYNNAT-GCAGTCTCTGTCTCCA 9869
                           i     v  v -     i ?i       ???i -v v           ii
  (TCTGTC)n#Sim        818 GTCTCTGTCTC-TGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTG 866

  Human_rDNA_Co       9870 TATCT-T-TTTYTCTCTCTCTCTNTCTGTCTATCTGTCTTTCT-TTTATY 9916
                            v   - - i ?     v     ?   v v v       i v - i i ?
  (TCTGTC)n#Sim        867 TCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTC 916

  Human_rDNA_Co       9917 T-TGTCTATCTC-CTRTCTGTCTCYCTTTCTCTGTGTCTGTCTGTCNCTC 9964
                            -     v v  -  ?   v v  ?  v       v       v v?   
  (TCTGTC)n#Sim        917 TCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC 966

  Human_rDNA_Co       9965 TCTCNTNCYTY 9975
                            v  - ?i? ?
  (TCTGTC)n#Sim        967 TGTC-TCTGTC 976

Matrix = Unknown
Transitions / transversions = 0.58 (11/19)
Gap_init rate = 0.05 (8 / 154), avg. gap size = 1.00 (8 / 8)


26 2.83 2.63 2.63 Human_rDNA_Consensus_(Long)_IGS 9976 10013 (22552) (TCTGTCTC)n#Simple_repeat 1 38 (0) c_b1s251i20 49

  Human_rDNA_Co       9976 TCTGTCTCTCTGTCTCTCTGTMC-ATCTGTCTCTCTGTC 10013
                                                - -v              
  (TCTGTCTC)n#S          1 TCTGTCTCTCTGTCTCTCTGT-CTCTCTGTCTCTCTGTC 38

Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.05 (2 / 37), avg. gap size = 1.00 (2 / 2)


231 21.13 4.43 3.29 Human_rDNA_Consensus_(Long)_IGS 10014 10115 (20209) (TCTGTC)n#Simple_repeat 977 1079 (290) m_b1s252i15 50

  Human_rDNA_Co      10014 STGTYCCTATCTTCTGTCTTACTCTCTTTCTCTTTTCTATCTCTCTGYCT 10063
                           ?   ?i  i  -       ivv     v    - v   v v      ?  
  (TCTGTC)n#Sim        977 CTGTCTCTGTC-TCTGTCTCTGTCTCTGTCTC-TGTCTCTGTCTCTGTCT 1024

  Human_rDNA_Co      10064 GTCTCTCCGNTC-CTG--TCTGTCTWYTTYTCTGTC-C-ATTTCTGTCTA 10108
                           v v    i -  -   --       ??v ?      - -i i       v
  (TCTGTC)n#Sim       1025 CTGTCTCTG-TCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC 1073

  Human_rDNA_Co      10109 TCTCTTY 10115
                            v  - ?
  (TCTGTC)n#Sim       1074 TGTC-TC 1079

Matrix = Unknown
Transitions / transversions = 0.55 (6/11)
Gap_init rate = 0.08 (8 / 101), avg. gap size = 1.12 (9 / 8)


36 8.88 1.64 0.00 Human_rDNA_Consensus_(Long)_IGS 10116 10176 (22389) (CT)n#Simple_repeat 1 62 (0) c_b1s251i21 51

  Human_rDNA_Co      10116 CTCTCTCTCTCTTTCTTTCTCTGTCTCTCTCTTTCTCTCTCTAKC-CTCT 10164
                                       i   i     v         i         v? -    
  (CT)n#Simple_          1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 50

  Human_rDNA_Co      10165 CTCTCTCTCTCT 10176
                                       
  (CT)n#Simple_         51 CTCTCTCTCTCT 62

Matrix = Unknown
Transitions / transversions = 1.50 (3/2)
Gap_init rate = 0.02 (1 / 60), avg. gap size = 1.00 (1 / 1)


231 21.13 4.43 3.29 Human_rDNA_Consensus_(Long)_IGS 10177 10456 (19868) (TCTGTC)n#Simple_repeat 1080 1365 (4) m_b1s252i15 52

  Human_rDNA_Co      10177 YTYTCTGTNNNCNTTATTRTTCTTCTGTCTTACTCTCTTTCTCTGCCTCT 10226
                           ? ?     -?? ?v v i?v  -       ivv     v      i    
  (TCTGTC)n#Sim       1080 GTCTCTGT-CTCTGTCTCTGTC-TCTGTCTCTGTCTCTGTCTCTGTCTCT 1127

  Human_rDNA_Co      10227 CTRTCTGTCTGTCTGTCTCTCTCCCTCTACATGTCTCTCTCTCTCTCACA 10276
                           v ?      --         v  i  v viv       v     v  v v
  (TCTGTC)n#Sim       1128 GTCTCTGTC--TCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT 1175

  Human_rDNA_Co      10277 CTCACTCTCTC-NNCTCTCTCTTTCTGTCTGT-T-TCTCTCTGTCTCTGT 10323
                           v  v  v    -??    v   i v v     - - v             
  (TCTGTC)n#Sim       1176 GTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGT 1225

  Human_rDNA_Co      10324 CT-T-TCTGTSTGTCTGTCTCTCTCTCTATTTGTCTTTCTCCCTCCCTGT 10371
                             - -   v ? v         v     i i v v i   vi   iv v 
  (TCTGTC)n#Sim       1226 CTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCT 1275

  Human_rDNA_Co      10372 CTGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTGTTTCACT 10421
                                 i v     v     v     v     v v       v v  v  
  (TCTGTC)n#Sim       1276 CTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT 1325

  Human_rDNA_Co      10422 CTATCTCTC-CTGTC-C-ATCTCTGTCT-T-TCTATGTCT 10456
                           v v   v  -     - -i         - -   v     
  (TCTGTC)n#Sim       1326 GTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCT 1365

Matrix = Unknown
Transitions / transversions = 0.30 (13/43)
Gap_init rate = 0.05 (14 / 279), avg. gap size = 1.00 (14 / 14)


264 28.93 2.11 5.07 Human_rDNA_Consensus_(Long)_IGS 10461 10602 (19722) MER39B#LTR/ERV1 274 411 (242) m_b1s502i3 53

  Human_rDNA_Co      10461 CTTTCTCTGTCAGTCTGTCA-AACMCCCCCGTGCCGGGTAGGGCCCTGCC 10509
                            i  v i  v v  vv    -  v?     i v  i iv    i      
  MER39B#LTR/ER        274 CCTTGTTTGACTGTAGGTCATAAGACCCCCATTCCAGAGAGGGTCCTGCC 323

  Human_rDNA_Co      10510 CCTTCCACGAAAGTGAGAAGCGTGCYCSGGCTTAGAGAGGCCGAGAGGA- 10558
                             viv v ii   vi  i ii ---- ?v   i         i   i  -
  MER39B#LTR/ER        324 CCACACCCAGAAGGAAGGAATG----CATGCTCAGAGAGGCCAAGAAGAA 369

  Human_rDNA_Co      10559 -CTGRACAGGCGGGCCTGCTTGNNGNNCTTCCCCYTTCGGTGTAT 10602
                           -  i?    i i   ---    ?? ??i      ?i  i  v   
  MER39B#LTR/ER        370 TCTAGACAGACAGGC---CTTGCTGGGTTTCCCCACTCAGTCTAT 411

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 36.73
Transitions / transversions = 1.57 (22/14)
Gap_init rate = 0.07 (10 / 141), avg. gap size = 1.00 (10 / 10)


439 25.06 3.80 7.48 Human_rDNA_Consensus_(Long)_IGS 10795 11057 (19267) L1PA13_3end#LINE/L1 646 899 (11) m_b1s551i1 54

  Human_rDNA_Co      10795 ACTAAATACNGCGTGTTTCTCATCTAGAAGTGGGAACTTACAGATGACAG 10844
                             i      ?  i    -    ii  v        i  v vv     v i
  L1PA13_3end#L        646 ACCAAATACCGCATGTT-CTCACTTATAAGTGGGAGCTAAATGATGAGAA 694

  Human_rDNA_Co      10845 TTCTTGCATGGGCAGAGCAAAGGGGGGCGGGGGGCATGSNGGAAGCCT-- 10892
                           i----i     i  ---  v  i    viviivi  ii??  i-    --
  L1PA13_3end#L        695 C----ACATGGACA---CATAGAGGGGAACAACACACACTGGG-GCCTAT 736

  Human_rDNA_Co      10893 -GGAGGGGGGGGGG--GGRGGAGAGACAGCTTCAAGAAAAAAAAAAAACC 10939
                           -      v  i   --  ?    i  v  vv   i      v  ---- i
  L1PA13_3end#L        737 CGGAGGGTGGAGGGTGGGAGGAGGGAGAGGATCAGGAAAAATAA----CT 782

  Human_rDNA_Co      10940 ACGATATGGGACATAGCACTGACTACC-GGGTGATGAAATCNCTCTGCAC 10988
                            ----     vvv   -i  v v    -            v?-    i  
  L1PA13_3end#L        783 A----ATGGGTACTAG-GCTTAATACCTGGGTGATGAAATAA-TCTGTAC 826

  Human_rDNA_Co      10989 ACTGAACACCCG---CCCAA-TTTACCTATGTCACARTCTTGCTCATGTA 11034
                            vii   v   i--- v   -           v   ?v i   v      
  L1PA13_3end#L        827 AACAAACCCCCATGACACAAGTTTACCTATGTAACAAACCTGCACATGTA 876

  Human_rDNA_Co      11035 TGCTTGAGCGACAAATAAAGNTT 11057
                           iv i   i vvv       i?  
  L1PA13_3end#L        877 CCCCTGAACTTAAAATAAAAGTT 899

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 31.86
Transitions / transversions = 1.03 (31/30)
Gap_init rate = 0.10 (25 / 262), avg. gap size = 1.16 (29 / 25)


17 13.97 2.33 2.33 Human_rDNA_Consensus_(Long)_IGS 11072 11114 (19210) (AGAGA)n#Simple_repeat 1 43 (0) m_b1s252i17 55

  Human_rDNA_Co      11072 AGAGAANCGAGGAGAGGAGARAGAGAAGAAAAGAGAA-AAAAGA 11114
                                 ?v  i    i    -        i       - i    
  (AGAGA)n#Simp          1 AGAGAAGAGAAGAGAAGAGA-AGAGAAGAGAAGAGAAGAGAAGA 43

Matrix = Unknown
Transitions / transversions = 4.00 (4/1)
Gap_init rate = 0.05 (2 / 42), avg. gap size = 1.00 (2 / 2)


1118 16.95 5.14 3.02 Human_rDNA_Consensus_(Long)_IGS 11207 11498 (18826) C AluSx#SINE/Alu (0) 312 15 m_b1s356i3 56

  Human_rDNA_Co      11207 TTTTCTTCTTCTTCTTTTCTTTCTTTTTTNTGGACTGAGTCTCTCTGGCT 11256
                               i  i  i  i    i   i      ?vi   v       ----   
C AluSx#SINE/Al        312 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTC----GCT 267

  Human_rDNA_Co      11257 CTGTCACCCAGGCTGCGNTGGAGTCGGTG-GCTCTCCGGCTCACTGAAAC 11305
                                i         vi?  v   -  i - v    -         v   
C AluSx#SINE/Al        266 CTGTCGCCCAGGCTGGAGTGCAGT-GGCGCGATCTC-GGCTCACTGCAAC 219

  Human_rDNA_Co      11306 CTCTGCTTYCCGGGTTCCAGTGATTCTTCT-----------TCG-GTAGC 11343
                              i  i ?        v  i      i  -----------i  -     
C AluSx#SINE/Al        218 CTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGC 169

  Human_rDNA_Co      11344 TGGGATTACAGGTNC-CACCATGGCAGCCGGCTCATTCGTTCTATTTTTA 11392
                                       i? - i   ivi iv      v   i-  v        
C AluSx#SINE/Al        168 TGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTT-TTGTATTTTTA 120

  Human_rDNA_Co      11393 GTAG-GCGGGGGTTTCTCCACGTTRGCCACGCTGGTCTCGAACTCCTGAC 11441
                               - vv        v   i   ?    v                    
C AluSx#SINE/Al        119 GTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGAC 70

  Human_rDNA_Co      11442 CACAAATGATCCACCTTCCTGGGCCTCCCCAAAGTGCTGGAAGCGACAGG 11491
                            v  ii      i  iv   v     -             i -iv     
C AluSx#SINE/Al         69 CTCAGGTGATCCGCCCGCCTCGGCCT-CCCAAAGTGCTGGGA-TTACAGG 22

  Human_rDNA_Co      11492 CCTGAGC 11498
                            v     
C AluSx#SINE/Al         21 CGTGAGC 15

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 15.99
Transitions / transversions = 1.40 (28/20)
Gap_init rate = 0.05 (14 / 291), avg. gap size = 1.71 (24 / 14)


12 0.00 4.35 4.35 Human_rDNA_Consensus_(Long)_IGS 11667 11689 (18635) (TAAC)n#Simple_repeat 1 23 (0) m_b1s252i18 57

  Human_rDNA_Co      11667 TAA-TAACTAACTAANCTAACTAA 11689
                              -           -        
  (TAAC)n#Simpl          1 TAACTAACTAACTAA-CTAACTAA 23

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.09 (2 / 22), avg. gap size = 1.00 (2 / 2)


1086 13.27 2.25 9.64 Human_rDNA_Consensus_(Long)_IGS 11784 12015 (18358) AluSx#SINE/Alu 64 280 (32) m_b1s356i4 58

  Human_rDNA_Co      11784 CCCGAGGTCAGGAGTT-GAGACCAGCCCGGCCCAGCGTGGGAAAACCCCG 11832
                             i             -          i    - i i   vi        
  AluSx#SINE/Al         64 CCTGAGGTCAGGAGTTCGAGACCAGCCTGGCC-AACATGGTGAAACCCCG 112

  Human_rDNA_Co      11833 TCTCTACTGAAAAT-CAGAAATGGAGTCAGGGCCGTGG-GGCAGGCACCT 11880
                                   i     -  i    v-  i i  --     -   iv  i   
  AluSx#SINE/Al        113 TCTCTACTAAAAATACAAAAATT-AGCCGGG--CGTGGTGGCGCGCGCCT 159

  Human_rDNA_Co      11881 GTAACCCCAGCTACTCGGGAGGCTGGGGTGGAAGAATTGCTTAA---CNG 11927
                               i                    i  ii i     i    i --- ? 
  AluSx#SINE/Al        160 GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGG 209

  Human_rDNA_Co      11928 CAGGCCGGAGGCTGCAGTGACCCAAGATCGCGCCACTGCACTACAGCCTN 11977
                           v   -      i        v  i                  v      -
  AluSx#SINE/Al        210 GAGG-CGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT- 257

  Human_rDNA_Co      11978 GGGTGACAGAGTGAGACCAGTCTCCAGATAAATCCTTN 12015
                              i       i     ---------------   v ?
  AluSx#SINE/Al        258 GGGCGACAGAGCGAGAC---------------TCCGTC 280

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 11.33
Transitions / transversions = 3.14 (22/7)
Gap_init rate = 0.11 (25 / 231), avg. gap size = 1.08 (27 / 25)


45 4.11 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 12016 12065 (20500) (CATA)n#Simple_repeat 1 50 (0) c_b1s251i22 59

  Human_rDNA_Co      12016 CATACATAAATACACACATACATACATACATACATACATACATACATACA 12065
                                   v     i                                   
  (CATA)n#Simpl          1 CATACATACATACATACATACATACATACATACATACATACATACATACA 50

Matrix = Unknown
Transitions / transversions = 1.00 (1/1)
Gap_init rate = 0.00 (0 / 49), avg. gap size = 0.0 (0 / 0)


1086 13.27 2.25 9.64 Human_rDNA_Consensus_(Long)_IGS 12066 12099 (18274) AluSx#SINE/Alu 281 311 (1) m_b1s356i4 58

  Human_rDNA_Co      12066 NAYATAAAAGAAAAMAAAAAAAAAGAAAAAAAAA 12099
                           ? ---    i    ?         i         
  AluSx#SINE/Al        281 CA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 311

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 11.33
Transitions / transversions = 1.00 (2/0)
Gap_init rate = 0.09 (3 / 33), avg. gap size = 1.00 (3 / 3)


224 25.43 2.38 4.32 Human_rDNA_Consensus_(Long)_IGS 12133 13249 (17179) (TTCTCT)n#Simple_repeat 1 1093 (597) m_b1s252i19 60

  Human_rDNA_Co      12133 TTCTCTCTCTCCTGTTTCTCTCTATTAGATCTCTGTTTTTTTCTCTGTGT 12182
                                 i   -  v i   i   v  ---     v i i       - - 
  (TTCTCT)n#Sim          1 TTCTCTTTCT-CTTTCTCTTTCTCTT---TCTCTTTCTCTTTCTCT-T-T 44

  Human_rDNA_Co      12183 CTCTTTCTCTGTCT-GTCCTGTCTGTCTGTCTCTTTCTTTCTTTCTGTCT 12231
                                     v   -v i  v i v   v         i i i   v   
  (TTCTCT)n#Sim         45 CTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCT 94

  Human_rDNA_Co      12232 CTGTCT-TTTCCCTCTCTCTCNTNNNGTNTCTGTCTTCTATCTTACTCTC 12280
                             v   -    i  i     i?i???v ?   v  -   v   ivi    
  (TTCTCT)n#Sim         95 CTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC-TCTTTCTCTTTCTC 143

  Human_rDNA_Co      12281 TTTCCCCCGTCTGTCTCTCTCTCTCNGTTCTCTCTCTCTGTCTGTCTGTN 12330
                              - i iv   v i     i    -v      i     - - v   v ?
  (TTCTCT)n#Sim        144 TTT-CTCTTTCTCTTTCTCTTTCTC-TTTCTCTTTCTCT-T-TCTCTTTC 189

  Human_rDNA_Co      12331 TNTNTCTGTCTGTCMTYTCTCTATCTNNNNTCCTCTGTCT-GTCCTCCTT 12379
                            ? ?   v i v  - ?     v   --?? i    v   -v i   i  
  (TTCTCT)n#Sim        190 TCTTTCTCTTTCTC-TTTCTCTTTCT--CTTTCTCTTTCTCTTTCTCTTT 236

  Human_rDNA_Co      12380 -TCYTTCTTTYTTTCTNNTCTCTGTCTMTCTTTCTGTCYYTTTCCCTCTC 12428
                           -  ?    i ? i   -?     v   ? i i   v  ??    i  i  
  (TTCTCT)n#Sim        237 CTCTTTCTCTTTCTCT-TTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC 285

  Human_rDNA_Co      12429 TCTTTCTCTGTC-YTNNGTCTGTCTCTCTCTCTTCTTCTTYCCNCTNTCT 12477
                                    v  -? ??v   v     i      ii    -i ?  ?   
  (TTCTCT)n#Sim        286 TCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT-TCTCTTTCT 334

  Human_rDNA_Co      12478 CTCCTGTCTGTCTGTCTCTCTATCT-TCCCYGCCATNTCTGTC-CTGTTG 12525
                             -i v   v   v i     v   - ii -v iv ?   v  -  -  v
  (TTCTCT)n#Sim        335 CT-TTCTCTTTCTCTTTCTCTTTCTCTTTC-TCTTTCTCTTTCTCT-TTC 381

  Human_rDNA_Co      12526 TCTHTC-CTTTCTCTCTCTCTGTCTGTYYGTCTCTKTCTCTCTGTCTCTG 12574
                              ?  -        i     v   v ??v   i ?   i   v i   v
  (TTCTCT)n#Sim        382 TCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTC 431

  Human_rDNA_Co      12575 NNTCTCTCTGTCTRTGTCTTCTGTCTMTCCCTGTTCNTCKGTCTTTCTCT 12624
                           ??     i v   ? v    - v   ?  i  -   -  ?v   i i   
  (TTCTCT)n#Sim        432 TTTCTCTTTCTCTTTCTCTT-TCTCTTTCTCT-TTC-TCTTTCTCTTTCT 478

  Human_rDNA_Co      12625 CTYTTTCTGGNCTCTATCTCTMACCNCNTTC-CNNTNTCNTGCTCTCTGT 12673
                             ? i   -v?    v     -vi ? ?   - ?? ?  - -i     v 
  (TTCTCT)n#Sim        479 CTTTCTCT-TTCTCTTTCTCT-TTCTCTTTCTCTTTCTC-T-TTCTCTTT 524

  Human_rDNA_Co      12674 CTCTCTGTGTGTCTCTGTCCCTCTTTCTRYCTATCTTCTGTCTTTCT-TT 12722
                               i v v v     - -i        ??i v    - v       -  
  (TTCTCT)n#Sim        525 CTCTTTCTCTTTCTCT-T-TCTCTTTCTCTTTCTCTT-TCTCTTTCTCTT 571

  Human_rDNA_Co      12723 CCTGTCTATCTNNCTNCNNNNCCTCTCTCTMTGTCNNNTGNCTTCYTCTS 12772
                           i  v i v   ??  - ????i  i     ? v  -?? v?   i?   ?
  (TTCTCT)n#Sim        572 TCTCTTTCTCTTTCT-CTTTCTCTTTCTCTTTCTC-TTTCTCTTTCTCTT 619

  Human_rDNA_Co      12773 TSTCTGTC-CTTTATC-TTCTYTTTCCGNTNTCCNCRTCTGTCTCTCTTT 12820
                            ?   v  -    v  -    ?   - v? ?  i?i?   v i       
  (TTCTCT)n#Sim        620 TCTCTTTCTCTTTCTCTTTCTCTTT-CTCTTTCTCTTTCTCTTTCTCTTT 668

  Human_rDNA_Co      12821 CTCTTCCCTCTSTGTCTTTCTNNTGTNTCTTTYCCTGTCTTTCTGTCTTT 12870
                                -i    ? v       -? v ?     ?i  v   i i v     
  (TTCTCT)n#Sim        669 CTCTT-TCTCTTTCTCTTTCT-CTTTCTCTTTCTCTTTCTCTTTCTCTTT 716

  Human_rDNA_Co      12871 CTC--TCTCNTTCTC-TT-TCTGTCTCTNTCTYTTTYT-TNCBTCTCACT 12915
                              --    ?     -  -   v     ?   ?   ? - ?i?   iv  
  (TTCTCT)n#Sim        717 CTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCT 766

  Human_rDNA_Co      12916 GTGTCTGTCTTYT-TTTTTCTYTCTCTCTCTATANNCGCNNCCTAYCTGT 12964
                           v v   v -  ? -   i   ?     i   v -?? v ??i  --  v 
  (TTCTCT)n#Sim        767 CTTTCTCT-TTCTCTTTCTCTTTCTCTTTCTCT-TTCTCTTTCT--CTTT 812

  Human_rDNA_Co      12965 CTCNTTCTC-TCCTCCTTBCTCNTTTCTCTTTC-AYTTMTGTTTCTCTGT 13012
                              ?     - i  -   ?   -          -v?  ? v       v 
  (TTCTCT)n#Sim        813 CTCTTTCTCTTTCT-CTTTCTC-TTTCTCTTTCTCTTTCTCTTTCTCTTT 860

  Human_rDNA_Co      13013 CTGTCTGTSCCTCNTCTYTCTCTCTCTGTCTGTCTYTTCTATCTTTCWTT 13062
                             v i v - i i?   ?     i   v i v   -    v i i  ?  
  (TTCTCT)n#Sim        861 CTCTTTCT-CTTTCTCTTTCTCTTTCTCTTTCTCT-TTCTCTTTCTCTTT 908

  Human_rDNA_Co      13063 -TCTRTCTCTCTATCTMWCNGTGTGCCTATCTTCTACCTCTGTCTATNCT 13111
                           -   ?     i v   ?? ?v v vi  v  -   vi    - - v -  
  (TTCTCT)n#Sim        909 CTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC-TCTTTCTCT-T-TCT-CT 954

  Human_rDNA_Co      13112 GTATCTGTCTGCKTTGTC-CTCTCTGTCTYCMTMTCTMTTTC-C-NT-TC 13157
                           v v   v   - ?  v  -i     v   - - ?   ?    - -? -  
  (TTCTCT)n#Sim        955 TTCTCTTTCT-CTTTCTCTTTCTCTTTCT-C-TTTCTCTTTCTCTTTCTC 1001

  Human_rDNA_Co      13158 TMTCTCTCWCTCNTTATCTMTCTSTCTGTCTGTCTCTGTCTTGTGTTTGT 13207
                            ?     i?   ?  v   ?   ? i v   v     v  - v v i v 
  (TTCTCT)n#Sim       1002 TTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC-TCTTTCTCT 1050

  Human_rDNA_Co      13208 GTGTCTTCCKCTGWC-C-GCCCNTNACATCTRTCTGTCTGTCTT 13249
                           v v    i ?  v? - -vi i? ?v -   ?   v i v    
  (TTCTCT)n#Sim       1051 TTCTCTTTCTCTTTCTCTTTCTCTTTC-TCTTTCTCTTTCTCTT 1093

Matrix = Unknown
Transitions / transversions = 0.83 (90/109)
Gap_init rate = 0.07 (77 / 1116), avg. gap size = 1.01 (78 / 77)

382 21.81 2.79 2.08 Human_rDNA_Consensus_(Long)_IGS 12134 13249 (17179) (TCTC)n#Simple_repeat 1 1126 (607) m_b1s252i20 60

  Human_rDNA_Co      12134 TCTCTCTCTC-CTGTTTCTCTCTAT-TAGATCTCTGTTTTTTTCTCTGTG 12181
                                     -  v i       v - vvv     v i i i     v v
  (TCTC)n#Simpl          1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50

  Human_rDNA_Co      12182 TCTCTTTCTCTGTCTGTC-CTGTCTGTCTGTCTCTTTCTTTCTTTCTGTC 12230
                                i     v   v  -  v   v   v     i   i   i   v  
  (TCTC)n#Simpl         51 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 100

  Human_rDNA_Co      12231 TCTGTCT-TTTCCCTCTCTCTCNTNNNGTNTCTGTCT-TCTATCTTACTC 12278
                              v   - i  i         - -??v ?   v   -   v   iv   
  (TCTC)n#Simpl        101 TCTCTCTCTCTCTCTCTCTCTC-T-CTCTCTCTCTCTCTCTCTCTCTCTC 148

  Human_rDNA_Co      12279 TCTTTCCCCCGTCTGTCTCTCTCTCTCNGT-TCTCTCTCTCTGTCTGTCT 12327
                              i  i i -   v            ?v -           v   v   
  (TCTC)n#Simpl        149 TCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 197

  Human_rDNA_Co      12328 GTNTNTNTCTGTCTGTCMTYTCTCTATCTNNNNTC-CTCTGTCTGTC-CT 12375
                           v ? ? ?   v   v  - ?     v   -???  -    v   v  -  
  (TCTC)n#Simpl        198 CTCTCTCTCTCTCTCTC-TCTCTCTCTCT-CTCTCTCTCTCTCTCTCTCT 245

  Human_rDNA_Co      12376 C-CTTTCYTTCTTTYTTTCTNNTCTCTGTCTMTCTTTCTGTCYYTTTCCC 12424
                            -  i  ?i   i ? i   -?     v   ?   i   v  ?? i  i 
  (TCTC)n#Simpl        246 CTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTCTCTCTCTCTC 294

  Human_rDNA_Co      12425 TCTCTCTTTCTCTGTCYTNNGTCTGTCTCTCTCTCT-TCT-TCT-TYCCN 12471
                                  i     v  - ??v   v           -   -   - ?i ?
  (TCTC)n#Simpl        295 TCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 343

  Human_rDNA_Co      12472 CTNTCTCTC-CTGTCTGTCTGTCTCTCTATCT-TCCCYGCCATNTCTGTC 12519
                             ?      -  v   v   v       v   -  i -v iv ?   v  
  (TCTC)n#Simpl        344 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTC 392

  Human_rDNA_Co      12520 -CTGT-TGTCTHTC-CTTTCTCTCTCTCTGTCTGTYYGTCTCTKTCTCTC 12566
                           -  v - v   ?  -  i           v   v ??v     ?      
  (TCTC)n#Simpl        393 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 442

  Human_rDNA_Co      12567 TGTCTCTGNNTCTCTCTGTCTRTGTCT-TCTGTCTMTCCCTGT-TCNTCK 12614
                            v     v??       v   ? v   -   v   ?  i  v -  -  ?
  (TCTC)n#Simpl        443 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCT 491

  Human_rDNA_Co      12615 GTCTTTCTCTCTYTTTCTGGNCTCTATCTCTMAC-CNCNTTC-CNNTNTC 12662
                           v   i       ? i   -v?    v     ?v - ? ?i  - ?? ?  
  (TCTC)n#Simpl        492 CTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 540

  Human_rDNA_Co      12663 NTGCTCTCTGTCTCTCTGTGTGTCTCTGTCCCTCTTTCTRYCTATCT-TC 12711
                           - -      v       v v v     v  i    i   ??  v   -  
  (TCTC)n#Simpl        541 -T-CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 588

  Human_rDNA_Co      12712 TGTCTTTCTTTC-CTGTCTATCTNNCTNCNNNNCCTCTCTCTMTGTCNNN 12760
                            v   i   i  -  v   v   ??  - ????i        ? v  -??
  (TCTC)n#Simpl        589 TCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTC-TC 636

  Human_rDNA_Co      12761 TGNCT-TCYTCTSTSTCTGTC-CTTTATCT-TCTYTTTC-CGNTNTC-CN 12805
                            v?  -  -   ? ?   v  -  i v   -   ? i  - v? ?  - ?
  (TCTC)n#Simpl        637 TCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 685

  Human_rDNA_Co      12806 CRTCTGTCTCTCTTTCTCT-TCCCTCTSTGTCTTTCTNNTGTNTCTTTYC 12854
                            -   v       i     -  i    ? v   i   -? v ?   i ?i
  (TCTC)n#Simpl        686 C-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCT 733

  Human_rDNA_Co      12855 CTGTCTTTCTGTCTTTCTCTCTCNTTCTCTTTCTGTCTCTNTCTYTTTYT 12904
                             v   i   v   i        ?i     i   v     ?   ? i ? 
  (TCTC)n#Simpl        734 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 783

  Human_rDNA_Co      12905 TNCBTCTCACTGTGTCTGTCTTYTTTTTTCTYTCTCTCTCTATANNCGCN 12954
                           i? -    v  v v   v   i?i i i   ?         v -?? v ?
  (TCTC)n#Simpl        784 CTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCT 831

  Human_rDNA_Co      12955 NCCTAYCTGTCTCNTTCTCTC-CTC-CTTBCTCNTTTCTCTTTCAYT-TM 13001
                           ?i  v?  v    ?i      -   -  i?   - i     i  v? - ?
  (TCTC)n#Simpl        832 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTC 880

  Human_rDNA_Co      13002 TGTTTCTCTGTCTGTCTGTSCCTCNTCTYTCTCTCTCTGTCTGTCTYT-T 13050
                            v i     v   v   v ?i   -   ?         v   v   ? - 
  (TCTC)n#Simpl        881 TCTCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCT 929

  Human_rDNA_Co      13051 CTATCTTTCWTTTCTRTCTCTCTATCTMWCNGTGTGCCTATCT-TCTACC 13099
                             v   i  - i   ?       v   ?? ?v v vi  v   -   vi 
  (TCTC)n#Simpl        930 CTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 978

  Human_rDNA_Co      13100 TCTGTCTATNCTGTATCTGTCTGCKTTGTC-CTCTCTGTCTYCMTMTCTM 13148
                              v   v -  v v   v   - ?i v  -      v   - - ?   ?
  (TCTC)n#Simpl        979 TCTCTCTCT-CTCTCTCTCTCT-CTCTCTCTCTCTCTCTCT-C-TCTCTC 1024

  Human_rDNA_Co      13149 TTTC-CNTTCTMTCTCTCWCTCNTTATCTMTCTSTCTGTCTGTCTCTGTC 13197
                            i  - ?i   ?      ?   ?i v   ?   ?   v   v     v  
  (TCTC)n#Simpl       1025 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 1074

  Human_rDNA_Co      13198 T-TGTGTTTGTGTGTCTTCCKCTGWC-CGCCCNTNACATCTRTCTGTCTG 13245
                            - v v i v v v   ii ?  v? - v i - ?v -   ?   v   v
  (TCTC)n#Simpl       1075 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCTC-TCTCTCTCTCTC 1122

  Human_rDNA_Co      13246 TCTT 13249
                              i
  (TCTC)n#Simpl       1123 TCTC 1126

Matrix = Unknown
Transitions / transversions = 0.61 (72/119)
Gap_init rate = 0.06 (66 / 1115), avg. gap size = 1.00 (66 / 66)


35 5.80 1.79 0.00 Human_rDNA_Consensus_(Long)_IGS 13250 13305 (19260) (TC)n#Simple_repeat 1 57 (0) c_b1s251i23 61

  Human_rDNA_Co      13250 TCTCTSTCTCTCTCTYTCTGTCTCTCTCTCTCTCTGTCT-TATCTCTCTC 13298
                                ?         ?   v               v   - v        
  (TC)n#Simple_          1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50

  Human_rDNA_Co      13299 TCTCTCT 13305
                                  
  (TC)n#Simple_         51 TCTCTCT 57

Matrix = Unknown
Transitions / transversions = 0.00 (0/3)
Gap_init rate = 0.02 (1 / 55), avg. gap size = 1.00 (1 / 1)


382 21.81 2.79 2.08 Human_rDNA_Consensus_(Long)_IGS 13306 13909 (16519) (TCTC)n#Simple_repeat 1127 1732 (1) m_b1s252i20 62

  Human_rDNA_Co      13306 GTCTGTCTMTKTTWCTGTCTGTCTGTCTCTCTYTCTGTCTCTGTCTCTGT 13355
                           v   v   ? ? i?  v   v   v       ?   v     v     v 
  (TCTC)n#Simpl       1127 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1176

  Human_rDNA_Co      13356 YTCTCTCTGTSTCTGTCT-TTTWYCTSTGT-TCTGTGCT-TCTKTCTGTC 13402
                           ?       v ?   v   - i ??  ? v -   v -  -   ?   v  
  (TCTC)n#Simpl       1177 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTC 1225

  Human_rDNA_Co      13403 TCCTTCTCNNNTTTTTGTCTGTCTCTMTCCCKTCT-TCTGTCYTTCTC-C 13450
                             ii    -?? i i v   v     ?  i -   -   v  ?i    - 
  (TCTC)n#Simpl       1226 TCTCTCTC-TCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTC 1273

  Human_rDNA_Co      13451 NNTC-CTGTCTGTCT-TATTTNTNTCTCCGTCTCTNTGNCTATCTCTGTC 13498
                           ??  -  v   v   - v i ? ?    iv     ? v?  v     v  
  (TCTC)n#Simpl       1274 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 1323

  Human_rDNA_Co      13499 TGTCTCTCTCTCTTTNNCCCTCTCTGTCTCTYTCYCTTTCTCTCTYTCTG 13548
                            v           i ?? i      v     ?  ?  i       ?   v
  (TCTC)n#Simpl       1324 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 1373

  Human_rDNA_Co      13549 TCNNNCTNTACCNCTCTCTYTCTCTTTCTGTCTGTCNNTGTCTGTCTCCC 13598
                             ???  ? vi ?      ?     i   v   v  ?? v   v    i 
  (TCTC)n#Simpl       1374 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 1423

  Human_rDNA_Co      13599 TNCACWTCTGTCTCTCTCACTCTCTCMTC-CCCTCTATGTCTCTCTCTCT 13647
                            - v -   v        v       -  - i    v v           
  (TCTC)n#Simpl       1424 T-CTC-TCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCT 1470

  Human_rDNA_Co      13648 CTTTCTGTCT-TTTCTCTCTCTGTCTGTCTCCTTCCCTYCATATCTCTCT 13696
                             i   v   - i         v   v    ii  i  - - v       
  (TCTC)n#Simpl       1471 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-C-TCTCTCTCT 1518

  Human_rDNA_Co      13697 CTCTCTCACTCACTCTCTCCATCTCTCTCTCTCTTTCTRTCTGTCTGTCT 13746
                                  v   v       iv             i   ?   v   v   
  (TCTC)n#Simpl       1519 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1568

  Human_rDNA_Co      13747 ATCTSTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTGTCTTTCTCCCTCC 13796
                           v   ? v   v   v                     v   i    i   i
  (TCTC)n#Simpl       1569 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1618

  Human_rDNA_Co      13797 CTGTCTGTCTGTCTCTCTCTCTCTMTCTCTGTCTCTGTCTCTCTCTTTCT 13846
                             v   v   v             ?     v     v         i   
  (TCTC)n#Simpl       1619 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1668

  Human_rDNA_Co      13847 CTTTCTGTCTGTTTCTCTCTATCTCTCT-TGTCCATCTCTGTCTTTCTAT 13895
                             i   v   v i       v       - v  iv     v   i   v 
  (TCTC)n#Simpl       1669 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1718

  Human_rDNA_Co      13896 GTCTGTCTCTTTCT 13909
                           v   v     i   
  (TCTC)n#Simpl       1719 CTCTCTCTCTCTCT 1732

Matrix = Unknown
Transitions / transversions = 0.52 (33/64)
Gap_init rate = 0.03 (18 / 603), avg. gap size = 1.00 (18 / 18)


311 25.23 1.69 2.56 Human_rDNA_Consensus_(Long)_IGS 13910 14027 (16401) MER39B#LTR/ERV1 284 400 (253) m_b1s502i4 63

  Human_rDNA_Co      13910 CTGTCAGTCTNCAGACACCCCGTGCAGGTAGGGCCCTGCCCTTCCCRC-G 13958
                               vi   v?v    v   vv v   iv    i       iv v ? - 
  MER39B#LTR/ER        284 CTGTAGGTCATAAGACCCCCATTCCAGAGAGGGTCCTGCCCCACACCCAG 333

  Human_rDNA_Co      13959 AGGGAGANGGTGCCCGGTGCTTAGAGGCGC-GRGAGGAATCTAGACAGGC 14007
                            i   ii?ii   ---i    i    iv  -i?  i            i 
  MER39B#LTR/ER        334 AAGGAAGGAATGC---ATGCTCAGAGAGGCCAAGAAGAATCTAGACAGAC 380

  Human_rDNA_Co      14008 GGGCCTTGCTGGGCTTCCCC 14027
                           i            i      
  MER39B#LTR/ER        381 AGGCCTTGCTGGGTTTCCCC 400

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 31.52
Transitions / transversions = 1.55 (17/11)
Gap_init rate = 0.04 (5 / 117), avg. gap size = 1.00 (5 / 5)


874 13.95 1.46 5.58 Human_rDNA_Consensus_(Long)_IGS 14182 14386 (16042) AluSx#SINE/Alu 94 290 (22) m_b1s356i5 64

  Human_rDNA_Co      14182 CCAACANWGAGTGAAACCC-GTCTCTACTAAAAATACAAAGCTGAGTGGG 14230
                                 ?--i         -                    iv v  iv  
  AluSx#SINE/Al         94 CCAACAT--GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGG 141

  Human_rDNA_Co      14231 GGGCGGTGGGGCCRGGC-CCTGTAATGCCAGCTCCTCGGGAGGCTGAGGC 14279
                            v i     v  ---  -        v      v                
  AluSx#SINE/Al        142 GCGTGGTGGCGC---GCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGC 188

  Human_rDNA_Co      14280 GGGGGAAAAACGCTTGAACCAGGGAGCCGGAGGCTGCAGGGAGCCGAGAT 14329
                           i  -- i  v          v     v      i     v          
  AluSx#SINE/Al        189 AGG--AGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGAT 236

  Human_rDNA_Co      14330 CGCGCCACTGCNCT-CGGCCCAGGCTGTAGAGTGAGTGAGACTCGGTCTC 14378
                                      ?  - i   ii   ----  vv   i       v     
  AluSx#SINE/Al        237 CGCGCCACTGCACTCCAGCCTGGGC----GACAGAGCGAGACTCCGTCTC 282

  Human_rDNA_Co      14379 TAAATAAA 14386
                           v   v   
  AluSx#SINE/Al        283 AAAAAAAA 290

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 15.00
Transitions / transversions = 0.69 (11/16)
Gap_init rate = 0.07 (14 / 204), avg. gap size = 1.00 (14 / 14)


23 19.36 1.59 3.23 Human_rDNA_Consensus_(Long)_IGS 15310 15372 (15056) (TTGTT)n#Simple_repeat 1 62 (0) m_b1s252i21 65

  Human_rDNA_Co      15310 TTGTTTTGTTTCGTTCTGTTTTGTTTTGTTCGTGTTTT-TCCTTTCTCGT 15358
                                      i   i              -v      - ii v i i  
  (TTGTT)n#Simp          1 TTGTTTTGTTTTGTTTTGTTTTGTTTTGTT-TTGTTTTGTTTTGTTTTGT 49

  Human_rDNA_Co      15359 TATGTCTTTCTTTT 15372
                            v   -   v    
  (TTGTT)n#Simp         50 TTTGT-TTTGTTTT 62

Matrix = Unknown
Transitions / transversions = 1.50 (6/4)
Gap_init rate = 0.05 (3 / 62), avg. gap size = 1.00 (3 / 3)


40 7.37 4.05 0.00 Human_rDNA_Consensus_(Long)_IGS 15563 15636 (16929) (TTG)n#Simple_repeat 1 77 (0) c_b1s251i24 66

  Human_rDNA_Co      15563 TTGTTGCTGTTGTT-TTGTTGTTGTTG-TGTCGTTGTTGTTGTTG-TGTT 15609
                                 i       -            -   i             -    
  (TTG)n#Simple          1 TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT 50

  Human_rDNA_Co      15610 GTCGTTGTTGWTGTCGTTGTCGTTGTT 15636
                             i       ?   i     i      
  (TTG)n#Simple         51 GTTGTTGTTGTTGTTGTTGTTGTTGTT 77

Matrix = Unknown
Transitions / transversions = 1.00 (5/0)
Gap_init rate = 0.04 (3 / 73), avg. gap size = 1.00 (3 / 3)


367 19.84 2.58 0.94 Human_rDNA_Consensus_(Long)_IGS 15711 16444 (14103) (TC)n#Simple_repeat 1 748 (317) m_b1s252i22 67

  Human_rDNA_Co      15711 TCTCTC-CTCTCT-TCGTTCTCTCTGTCTGTCTCTGTCTCTCT-TTTCTC 15757
                                 -      -  vi       v   v     v       - i    
  (TC)n#Simple_          1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50

  Human_rDNA_Co      15758 TGTCTGTCT-TCTCTCTCTCTCT-TCTGTST-TCTNTCTCTCTCACTGTC 15804
                            v   v   -             -   v ? -   ?        v  v  
  (TC)n#Simple_         51 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 100

  Human_rDNA_Co      15805 TGTCT-TGTCTCT-TCTCTCTGTCTCTCTCTCTCTCTCTCTSTCTCTCTC 15852
                            v   - v     -       v                   ?        
  (TC)n#Simple_        101 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 150

  Human_rDNA_Co      15853 CNTCTGTCT-TCTGTCYTCCCCCTCTCTCTGTCTGNCTNTCTTTCTGTCT 15901
                           i?   v   -   v  -  i i        v   v?  ?   i   v   
  (TC)n#Simple_        151 TCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 199

  Human_rDNA_Co      15902 CTCTCTCTC-CNCTGTTTCTTKNNCTCTCTCTNTCTNTCTCTCTCTCTCT 15950
                                    - ?  v i   i???        ?   ?             
  (TC)n#Simple_        200 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 249

  Human_rDNA_Co      15951 GTCATTGTC-CTCTGTCTCTCTCTGTCTGTCTCT-TTTCT-TCTGTCTTT 15997
                           v  vi v  -    v         v   v     - i   -   v   i 
  (TC)n#Simple_        250 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 299

  Human_rDNA_Co      15998 CTCTCTGTCNTDTCCTTCTCTGTCTCTCTYTNCT-TCTCTGTGTCTCT-T 16045
                                 v  - ?  ii     v       ? -  -     v v     - 
  (TC)n#Simple_        300 CTCTCTCTC-TCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCT 347

  Human_rDNA_Co      16046 GTGTRTCTCTCTCTGTCTYTCNANNNNNGTCTGTCTCTCTGTCTGTCTCT 16095
                           v v ?         v   ?  ?v?????v   v       v   v     
  (TC)n#Simple_        348 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 397

  Human_rDNA_Co      16096 RTCTATNYCNNT-TCTATCTGTCTCTGTCTCRCTGTGTYTGTCT-TCTGT 16143
                           ?   v ?? ?? -   v   v     v    ?  v v ? v   -   v 
  (TC)n#Simple_        398 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 447

  Human_rDNA_Co      16144 CTCGGTCTCTCTCTCTC-CTGTCTGTTTCTCTCTCNCGCTGTCSDTTTCT 16192
                              vv            -  v   v i        ? v  v  ?? i   
  (TC)n#Simple_        448 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 497

  Human_rDNA_Co      16193 CTCTCTCTCTCTCTCTCTGTCT-TTTRTCTTTCTTTCTGTCTNCTCTGTC 16241
                                             v   - i ?   i   i   v   -    v  
  (TC)n#Simple_        498 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTC 546

  Human_rDNA_Co      16242 TGTCNTGTCTGTCT-TCTGTCTTACTGTCTTTCTCCGCCTGTCTGTCTGT 16290
                            v  - v   v   -   v   iv  v   i    ivi  v   v   v 
  (TC)n#Simple_        547 TCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 595

  Human_rDNA_Co      16291 CTCTGTCTCTCTCTGTCTCTCTCTCTCTCYC-CCCTNNANCGCTGTTTCT 16339
                               v         v              ? - i  ??v? v  v i   
  (TC)n#Simple_        596 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 645

  Human_rDNA_Co      16340 CTGTCTCTGTCTGTGTCTCTCTTTCTGTCT-TTTCTCTCTGTCTGTCTTT 16388
                             v     v   v v       i   v   - i       v   v   i 
  (TC)n#Simple_        646 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 695

  Human_rDNA_Co      16389 CTCTCTNTGTCTCTTTYNNCGTCTCTCTGTCTGTCTCTGTCTCTCNTCTC 16438
                                 ? v     i -?? -       v   v     v      -    
  (TC)n#Simple_        696 CTCTCTCTCTCTCTCT-CTC-TCTCTCTCTCTCTCTCTCTCTCTC-TCTC 742

  Human_rDNA_Co      16439 TCTCTC 16444
                                 
  (TC)n#Simple_        743 TCTCTC 748

Matrix = Unknown
Transitions / transversions = 0.35 (28/80)
Gap_init rate = 0.04 (30 / 733), avg. gap size = 1.00 (30 / 30)


44 2.21 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 16445 16491 (16074) (TG)n#Simple_repeat 1 47 (0) c_b1s251i25 68

  Human_rDNA_Co      16445 TGTGGGTGTGTGTGTGTGTGTRTGTGTGTGTGTGTGTGTGTGTGTGT 16491
                               v                ?                         
  (TG)n#Simple_          1 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 47

Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.00 (0 / 46), avg. gap size = 0.0 (0 / 0)


367 19.84 2.58 0.94 Human_rDNA_Consensus_(Long)_IGS 16492 16804 (13743) (TC)n#Simple_repeat 749 1064 (1) m_b1s252i22 69

  Human_rDNA_Co      16492 CTGNTTCTGTCTTACTCTCTTTCTCTGYC-CTGTCTGTCTGCCTGTCTGT 16540
                             v?i   v   iv      i     v? -  v   v   vi  v   v 
  (TC)n#Simple_        749 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 798

  Human_rDNA_Co      16541 WTGTCTCTCTCTCTCTGCCTGTCTCTCTNCCTTCCTGTCTGTTTCTCTCT 16590
                           ? v             vi  v       ?i  ii  v   v i       
  (TC)n#Simple_        799 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 848

  Human_rDNA_Co      16591 CTTTCTGT-TCTCTCTGTCT-TGTCCATCTCTGTCTTYCSTCTGTNNTCT 16638
                             i   v -       v   - v  iv     v   i? -   v -?   
  (TC)n#Simple_        849 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCTCT-CTCT 896

  Human_rDNA_Co      16639 CTTTATCTGTCTCTCTCTCTCTNT-TCTGTCTTTCTCTCTCTTTGTGTAT 16687
                             i v   v             ? -   v   i         i v v v 
  (TC)n#Simple_        897 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 946

  Human_rDNA_Co      16688 CGTTGTCTCTCTGTCTGTCTCTGTCTCTGTCTCTCTGTCTCTCTCTCTCT 16737
                            vi v       v   v     v     v       v             
  (TC)n#Simple_        947 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 996

  Human_rDNA_Co      16738 CTCTCTCTCTCTGTCTGTCTGTCCGTCTGTCTGTCTCGGTCTCTGGCTCT 16787
                                       v   v   v  iv   v   v    vv     vv    
  (TC)n#Simple_        997 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1046

  Human_rDNA_Co      16788 CTATCTC-CGCCCTCTCT 16804
                             v    - v i      
  (TC)n#Simple_       1047 CTCTCTCTCTCTCTCTCT 1064

Matrix = Unknown
Transitions / transversions = 0.40 (18/45)
Gap_init rate = 0.02 (7 / 312), avg. gap size = 1.00 (7 / 7)


22 19.51 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 17794 17834 (12713) (G)n#Simple_repeat 1 41 (0) m_b1s252i23 70

  Human_rDNA_Co      17794 GGTGGGAGGGGGGGGGGGGGGGGGGGTTGGGGGTTGTGGGG 17834
                             v   i                   vv     vv v    
  (G)n#Simple_r          1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 41

Matrix = Unknown
Transitions / transversions = 0.17 (1/6)
Gap_init rate = 0.00 (0 / 40), avg. gap size = 0.0 (0 / 0)


810 14.08 17.03 2.40 Human_rDNA_Consensus_(Long)_IGS 18062 18243 (12304) C AluSx#SINE/Alu (9) 303 96 m_b1s357i3 71

  Human_rDNA_Co      18062 TTTGTGTGTTTGTTTGTTTCTGAGATGGAGTCTTGCTCTGTC-CCCAGGC 18110
                              v v v   v   v   i     i       i        -       
C AluSx#SINE/Al        303 TTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGC 254

  Human_rDNA_Co      18111 TGGAGTGCAGTGGCGTGATCTCAGCTCACTGGAACCTCTGCCTCCTGGGT 18160
                                          i      i        v      i      i    
C AluSx#SINE/Al        253 TGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGT 204

  Human_rDNA_Co      18161 TCAAGTGATTCTCCTGTCTCAA---------------------------- 18182
                                i          i    i----------------------------
C AluSx#SINE/Al        203 TCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGC 154

  Human_rDNA_Co      18183 --GCCACCATGGCCGGCTCATTTTTTTTTTTTTTTTTGGTAGACACGGGG 18230
                           --       i v      v ----     v v     i     v  -   
C AluSx#SINE/Al        153 GCGCCACCACGCCCGGCTAA----TTTTTGTATTTTTAGTAGAGAC-GGG 109

  Human_rDNA_Co      18231 GTTTCACCCTCTT 18243
                                   v v  
C AluSx#SINE/Al        108 GTTTCACCATGTT 96

Matrix = 18p53g.matrix
Kimura (with divCpGMod) = 10.80
Transitions / transversions = 0.92 (12/13)
Gap_init rate = 0.04 (8 / 181), avg. gap size = 4.50 (36 / 8)


16 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 18305 18322 (12225) (T)n#Simple_repeat 1 18 (0) m_b1s252i24 72

  Human_rDNA_Co      18305 TTTTTTTTTTTTTTTTTT 18322
                                             
  (T)n#Simple_r          1 TTTTTTTTTTTTTTTTTT 18

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 17), avg. gap size = 0.0 (0 / 0)


2013 10.56 0.33 0.99 Human_rDNA_Consensus_(Long)_IGS 19047 19352 (12985) C AluY#SINE/Alu (5) 306 3 c_b1s352i1 73

  Human_rDNA_Co      19047 TTTATTTTTTTAATTTATTTCTCTTGAGGCRGCGTCTCGCTCTGTAGCCC 19096
                              v       vv   v   i i     i ? v            v    
C AluY#SINE/Alu        306 TTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCC 257

  Human_rDNA_Co      19097 AGGCTGGAGTSCGATGGTGTGATCTCGGCTCACTGCAACCCGCCACCTCC 19146
                                     ? ii   i i                  v i-  i     
C AluY#SINE/Alu        256 AGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCT-CCGCCTCC 208

  Human_rDNA_Co      19147 CTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC 19196
                            -       v  v                                     
C AluY#SINE/Alu        207 C-GGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC 159

  Human_rDNA_Co      19197 AGGTGCCCGCCACCACGCCCAGCTAATCTTT-ATACTTTTAATAGAGGCG 19245
                              i                i      i   -i  i     i     i  
C AluY#SINE/Alu        158 AGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACG 109

  Human_rDNA_Co      19246 GGGTTTCACCGTGTTGGCCCCGGATGGTCTCGATCTCTTGACCTCGTGAC 19295
                                          i   v-                i           i
C AluY#SINE/Alu        108 GGGTTTCACCGTGTTAGCCA-GGATGGTCTCGATCTCCTGACCTCGTGAT 60

  Human_rDNA_Co      19296 CCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCACTG 19345
                                                           v               i 
C AluY#SINE/Alu         59 CCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCG 10

  Human_rDNA_Co      19346 AGCCCGG 19352
                           v      
C AluY#SINE/Alu          9 CGCCCGG 3

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 9.44
Transitions / transversions = 1.67 (20/12)
Gap_init rate = 0.01 (4 / 305), avg. gap size = 1.00 (4 / 4)


12 20.35 0.00 4.76 Human_rDNA_Consensus_(Long)_IGS 19725 19768 (11084) (AACA)n#Simple_repeat 1 42 (0) m_b1s252i25 74

  Human_rDNA_Co      19725 AACAAATCAAGGAACACAACTAAARAAACACACACACAAACCAA 19768
                                 -   iv  -    vi   ?     v   v      v  
  (AACA)n#Simpl          1 AACAAA-CAAACAA-ACAAACAAACAAACAAACAAACAAACAAA 42

Matrix = Unknown
Transitions / transversions = 0.40 (2/5)
Gap_init rate = 0.05 (2 / 43), avg. gap size = 1.00 (2 / 2)


180 30.99 2.74 2.74 Human_rDNA_Consensus_(Long)_IGS 21532 21604 (9248) C OldhAT1#DNA/hAT-Ac (843) 1999 1927 m_b1s601i0 75

  Human_rDNA_Co      21532 AGGCTCTTTTGGTCACATTCTGATCCTTTGGTAAGCCGATCTGTCT--TG 21579
                             v        --   vi      vi iii v   v  v     i --  
C OldhAT1#DNA/h       1999 AGTCTCTTTTG--CACTCTCTGATGTTCCAGGAAGACGTTCTGTTTCATG 1952

  Human_rDNA_Co      21580 CAATATACATGTCCCGGCGATGGAA 21604
                           vi  i   v  v  i vvv    i 
C OldhAT1#DNA/h       1951 AGATGTACTTGGCCTGCACATGGGA 1927

Matrix = 25p53g.matrix
Kimura (with divCpGMod) = 40.27
Transitions / transversions = 0.83 (10/12)
Gap_init rate = 0.04 (3 / 72), avg. gap size = 1.33 (4 / 3)


564 23.82 0.00 13.64 Human_rDNA_Consensus_(Long)_IGS 22597 22762 (8120) AluJb#SINE/Alu 137 281 (31) m_b1s357i4 76

  Human_rDNA_Co      22597 GCCGGGTGCTGGTGGCTCMCGCCTGTAACCCCAACACTTTGGGAGGCCGA 22646
                                 i -       v ?        ii    i vvi i       i  
  AluJb#SINE/Al        137 GCCGGGCG-TGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA 185

  Human_rDNA_Co      22647 GGCCGTGGGATCCCTCGAGGAACGGCCTAACCCTNGGGAGGTTGAGGTTG 22696
                              v vi     v  i   ------------- i?       i    i  
  AluJb#SINE/Al        186 GGCGGGAGGATCGCTTGAG-------------CCCGGGAGGTCGAGGCTG 222

  Human_rDNA_Co      22697 CAGTGAGTGAGCCATAGTTGTGTCACTGTGCTCCAGTCTGGGGAAAGACA 22746
                            ----        i ii i i i     ii      i     ---v    
  AluJb#SINE/Al        223 C----AGTGAGCCGTGATCGCGCCACTGCACTCCAGCCTGGG---CGACA 265

  Human_rDNA_Co      22747 GAATGAGGCCCTGCCA 22762
                             ii   i     i v
  AluJb#SINE/Al        266 GAGCGAGACCCTGTCT 281

Matrix = 18p53g.matrix
Kimura (with divCpGMod) = 22.68
Transitions / transversions = 3.12 (25/8)
Gap_init rate = 0.13 (21 / 165), avg. gap size = 1.00 (21 / 21)


33 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 22763 22793 (9772) (CAGG)n#Simple_repeat 1 31 (0) c_b1s251i26 77

  Human_rDNA_Co      22763 CAGGCAGGCAGGCAGGCAGGCAGGCAGGCAG 22793
                                                          
  (CAGG)n#Simpl          1 CAGGCAGGCAGGCAGGCAGGCAGGCAGGCAG 31

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 30), avg. gap size = 0.0 (0 / 0)


1481 14.49 1.36 1.70 Human_rDNA_Consensus_(Long)_IGS 22864 23158 (9209) C AluSx#SINE/Alu (17) 295 2 c_b1s352i2 78

  Human_rDNA_Co      22864 TTTTTTTTCCCTTGNNGAGGAGTTTCACTCTTGGTGCCGCGGCTGGAGTK 22913
                                   iii   ??iv     i  i    - vi   vv         ?
C AluSx#SINE/Al        295 TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT-GTCGCCCAGGCTGGAGTG 247

  Human_rDNA_Co      22914 TCAGTGGCACCATCTCGGCTCACANCAGCCTCCACCTCCCGGCGTTCAAG 22963
                           -       i v            v?  i     i        -       
C AluSx#SINE/Al        246 -CAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGG-GTTCAAG 199

  Human_rDNA_Co      22964 CGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGGAGGAGC 23013
                                                 i                   v -v v  
C AluSx#SINE/Al        198 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCG-CGCGC 150

  Human_rDNA_Co      23014 CACCACACCCAGCTGA-TTTTGTATTGTTAGTAGAGGCGGCATTTCTCCC 23062
                                 i   i   i -         v         i   vi    -v  
C AluSx#SINE/Al        149 CACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTC-ACC 101

  Human_rDNA_Co      23063 ATGTGGGTCAGGCTGGTCTCGAACTGGCGACC-CAGTGGATCTG-CCGCC 23110
                               v  i                 vvi    -   vv    i -     
C AluSx#SINE/Al        100 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCC 51

  Human_rDNA_Co      23111 -CGGCCTCCCAAAGTGCTGGGGTGACAGGCGTGAGCCATCGTGACTGGC 23158
                           -                    i v              i  i v i   
C AluSx#SINE/Al         50 TCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGC 2

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 12.54
Transitions / transversions = 1.21 (23/19)
Gap_init rate = 0.03 (9 / 294), avg. gap size = 1.00 (9 / 9)


22 9.93 2.17 2.17 Human_rDNA_Consensus_(Long)_IGS 23166 23194 (8346) (TTTA)n#Simple_repeat 1 29 (17) m_b1s252i26 79

  Human_rDNA_Co      23166 TTTATTTATTT-TTTTTTTAATTATTTTAC 23194
                                      -   v    v   -    i
  (TTTA)n#Simpl          1 TTTATTTATTTATTTATTTATTTA-TTTAT 29

Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.07 (2 / 28), avg. gap size = 1.00 (2 / 2)

2090 9.44 0.32 1.30 Human_rDNA_Consensus_(Long)_IGS 23195 23218 (9203) C AluY#SINE/Alu (3) 308 285 c_b1s352i3 79

  Human_rDNA_Co      23195 TTTTTTTAGTTTTCCATTTTAATC 23218
                                  vv    iiv    vv i
C AluY#SINE/Alu        308 TTTTTTTTTTTTTTTTTTTTTTTT 285

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 7.24
Transitions / transversions = 0.60 (3/5)
Gap_init rate = 0.00 (0 / 23), avg. gap size = 0.0 (0 / 0)


45 2.00 0.00 3.77 Human_rDNA_Consensus_(Long)_IGS 23219 23273 (9292) (TATT)n#Simple_repeat 1 53 (0) c_b1s251i27 80

  Human_rDNA_Co      23219 TATTTATTTATTTACATTTATTTATTTATTTATTTATTTACTTATTTATT 23268
                                        --                         i         
  (TATT)n#Simpl          1 TATTTATTTATTT--ATTTATTTATTTATTTATTTATTTATTTATTTATT 48

  Human_rDNA_Co      23269 TATTT 23273
                                
  (TATT)n#Simpl         49 TATTT 53

Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.04 (2 / 54), avg. gap size = 1.00 (2 / 2)


2090 9.44 0.32 1.30 Human_rDNA_Consensus_(Long)_IGS 23274 23559 (8862) C AluY#SINE/Alu (27) 284 2 c_b1s352i3 79

  Human_rDNA_Co      23274 TCGAGACAGACTCTNCSGCTCTGCTGCCCAGGCTGGAGTGCAGCGGCGTG 23323
                            i     i  v   ?--      ii                  i    i 
C AluY#SINE/Alu        284 TTGAGACGGAGTCTC--GCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCG 237

  Human_rDNA_Co      23324 ATCTCGGCTCACTGCAARCTCCGCCTCCCGGGTTCACGCCATTCTCCTGC 23373
                                            ?                                
C AluY#SINE/Alu        236 ATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGC 187

  Human_rDNA_Co      23374 CTCAGCCTCCCAAGTAGCTGGGACTACAGAGGCCCCCCACCGTGCCCGGC 23423
                                      i                 iv    v     ii       
C AluY#SINE/Alu        186 CTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCGGC 137

  Human_rDNA_Co      23424 TAACTTTTTTGTATTTTRAGTAGAGATGGGGTTTCACTGTGGTAGCCAGG 23473
                              -             ?        i          i   v        
C AluY#SINE/Alu        136 TAA-TTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGG 88

  Human_rDNA_Co      23474 ATGGTCTCGATCTCCTGANCCCGTGATCCGTCCCACCTCGGCCTCCCAAA 23523
                                             ? i         -   i               
C AluY#SINE/Alu         87 ATGGTCTCGATCTCCTGACCTCGTGATCCG-CCCGCCTCGGCCTCCCAAA 39

  Human_rDNA_Co      23524 GTGCTGGGATGACAGGCGTGAGCCACCGC-CCCGACC 23559
                                     v                  -    i  
C AluY#SINE/Alu         38 GTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC 2

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 7.24
Transitions / transversions = 3.00 (15/5)
Gap_init rate = 0.02 (5 / 285), avg. gap size = 1.00 (5 / 5)


22 9.93 2.17 2.17 Human_rDNA_Consensus_(Long)_IGS 23560 23575 (7965) (TTTA)n#Simple_repeat 30 45 (1) m_b1s252i26 81

  Human_rDNA_Co      23560 TATTTATCTATTTATT 23575
                                  i        
  (TTTA)n#Simpl         30 TATTTATTTATTTATT 45

Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.00 (0 / 15), avg. gap size = 0.0 (0 / 0)


18 12.17 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 23607 23633 (7907) (T)n#Simple_repeat 1 27 (0) m_b1s252i27 82

  Human_rDNA_Co      23607 TTTTGTAATTTTTTTTTTTTTTTTTTT 23633
                               v vv                   
  (T)n#Simple_r          1 TTTTTTTTTTTTTTTTTTTTTTTTTTT 27

Matrix = Unknown
Transitions / transversions = 0.00 (0/3)
Gap_init rate = 0.00 (0 / 26), avg. gap size = 0.0 (0 / 0)


72 2.79 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 24588 24660 (7905) (ATACA)n#Simple_repeat 1 73 (0) c_b1s251i28 83

  Human_rDNA_Co      24588 ATACAATACAATACAATCCGATACAATACAATACAATACAATACAATACA 24637
                                            v i                              
  (ATACA)n#Simp          1 ATACAATACAATACAATACAATACAATACAATACAATACAATACAATACA 50

  Human_rDNA_Co      24638 ATACAATACAATACAATACAATA 24660
                                                  
  (ATACA)n#Simp         51 ATACAATACAATACAATACAATA 73

Matrix = Unknown
Transitions / transversions = 1.00 (1/1)
Gap_init rate = 0.00 (0 / 72), avg. gap size = 0.0 (0 / 0)


1525 14.68 1.72 1.37 Human_rDNA_Consensus_(Long)_IGS 24668 24957 (7536) AluSx#SINE/Alu 12 302 (10) c_b1s352i4 84

  Human_rDNA_Co      24668 GTGGCTCATGCCTGTCATCCCGTCACTTTGGGATGCCGAGGTGGGCCGCA 24717
                                   i      v     iv          v       i    v - 
  AluSx#SINE/Al         12 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGG-A 60

  Human_rDNA_Co      24718 TCACCTGAAGTCGGGGAGTTGGAGACAAGCCCGACCAACATGG-GAAATC 24766
                                   i   i  -    v     v    i i         -    i 
  AluSx#SINE/Al         61 TCACCTGAGGTCAGG-AGTTCGAGACCAGCCTGGCCAACATGGTGAAACC 109

  Human_rDNA_Co      24767 CCGTCTCAATTGAAAATACAAAA-CTAGCGGTG-GCGGTGGCACATGCCT 24814
                                  v i i           -i    v v - i      i ii    
  AluSx#SINE/Al        110 CCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT 159

  Human_rDNA_Co      24815 ATAATCCCAGCTGCTAGGAAGGCTGAGGCAGGAGAATGGCTTGAACCTGG 24864
                           i           i  v  i                  v         i  
  AluSx#SINE/Al        160 GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGG 209

  Human_rDNA_Co      24865 GAGGCGGAGGTTGCAGTGAGCGRRGAT--CGCCATCGCACTCCAGTCCTG 24912
                                                v??   --     ii         -    
  AluSx#SINE/Al        210 GAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAG-CCTG 258

  Human_rDNA_Co      24913 AGCAACAAAAGNGAAACTCCGTCTCAAAATAAATACATAAATAAA 24957
                           i  i  - i  ?  i              v   v v v   v   
  AluSx#SINE/Al        259 GGCGAC-AGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 302

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 13.87
Transitions / transversions = 1.47 (25/17)
Gap_init rate = 0.03 (8 / 289), avg. gap size = 1.12 (9 / 8)


1235 13.04 4.83 4.83 Human_rDNA_Consensus_(Long)_IGS 25031 25320 (7173) AluSx#SINE/Alu 9 298 (14) c_b1s352i5 85

  Human_rDNA_Co      25031 GNAGTGGCTCAAGCCTGTCATCCCCTCACTTTGGGAGGCCAAGGCGG-TG 25079
                            ?i        v      v     vv              i      -i 
  AluSx#SINE/Al          9 GCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCG 58

  Human_rDNA_Co      25080 GATCA----AG---ARGCGGTC-AGACCAACAGGGCCAGTATGAGTGAAA 25121
                                ----  --- ? v v  -      i vv     ii   -      
  AluSx#SINE/Al         59 GATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATG-GTGAAA 107

  Human_rDNA_Co      25122 CCC-GTCTCTACTCACAATACACAACATTRGC--GGCGCTGTGCTGTGCT 25168
                              -         v v      v  -   ?  --    iv   vi i  -
  AluSx#SINE/Al        108 CCCCGTCTCTACTAAAAATACAAAA-ATTAGCCGGGCGTGGTGGCGCGC- 155

  Human_rDNA_Co      25169 GTACTGTCTGTAATCCCAGCTACTCCGGGAGCCSARGCTGAGGCAGGAAG 25218
                           ----- i                  -     -----            ii
  AluSx#SINE/Al        156 -----GCCTGTAATCCCAGCTACTC-GGGAG-----GCTGAGGCAGGAGA 194

  Human_rDNA_Co      25219 AACGCTTGAACCTGGGGGGCGGAGGTTGCAGTGAG-CGAGACAGCGCCAC 25267
                            v          i   i                  -     iv       
  AluSx#SINE/Al        195 ATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCAC 244

  Human_rDNA_Co      25268 TGCAACCCAGCCTGGGCGACA-AGCGAGACTCCGTCTCAAAATGAAAATG 25316
                               vi               -                    vi    vi
  AluSx#SINE/Al        245 TGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA 294

  Human_rDNA_Co      25317 AAAA 25320
                               
  AluSx#SINE/Al        295 AAAA 298

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 12.15
Transitions / transversions = 1.00 (18/18)
Gap_init rate = 0.08 (22 / 289), avg. gap size = 1.27 (28 / 22)


18 17.73 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 25362 25401 (6789) (A)n#Simple_repeat 1 40 (0) m_b1s252i28 86

  Human_rDNA_Co      25362 AAAAANNAAAAGAAAAAAAAAAAACAACAAAACAGAACAA 25401
                                ??    i            v  v    v i  v  
  (A)n#Simple_r          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 40

Matrix = Unknown
Transitions / transversions = 0.50 (2/4)
Gap_init rate = 0.00 (0 / 39), avg. gap size = 0.0 (0 / 0)


17 10.47 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 25745 25776 (6414) (TTGCC)n#Simple_repeat 1 32 (0) m_b1s252i29 87

  Human_rDNA_Co      25745 TTNCCTTGCCTGGACTTGCCTGGCCTTGCCTT 25776
                             ?        v v       v          
  (TTGCC)n#Simp          1 TTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTT 32

Matrix = Unknown
Transitions / transversions = 0.00 (0/3)
Gap_init rate = 0.00 (0 / 31), avg. gap size = 0.0 (0 / 0)


1619 15.39 0.66 1.66 Human_rDNA_Consensus_(Long)_IGS 25780 25803 (6762) C AluSx#SINE/Alu (1) 311 288 c_b1s352i6 88

  Human_rDNA_Co      25780 TTTCTTTCTTTCTTTATTACTTTC 25803
                              i   i   i   v  vi   i
C AluSx#SINE/Al        311 TTTTTTTTTTTTTTTTTTTTTTTT 288

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 13.03
Transitions / transversions = 2.50 (5/2)
Gap_init rate = 0.00 (0 / 23), avg. gap size = 0.0 (0 / 0)


83 0.00 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 25804 25876 (6689) (TCT)n#Simple_repeat 1 73 (0) c_b1s251i29 89

  Human_rDNA_Co      25804 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC 25853
                                                                             
  (TCT)n#Simple          1 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC 50

  Human_rDNA_Co      25854 TTCTTCTTCTTCTTCTTCTTCTT 25876
                                                  
  (TCT)n#Simple         51 TTCTTCTTCTTCTTCTTCTTCTT 73

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 72), avg. gap size = 0.0 (0 / 0)


1619 15.39 0.66 1.66 Human_rDNA_Consensus_(Long)_IGS 25877 26155 (6410) C AluSx#SINE/Alu (25) 287 12 c_b1s352i6 88

  Human_rDNA_Co      25877 TTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTAGAGGGCAATGGGCG 25926
                                    i    i  i    -  i         i   v   i   -  
C AluSx#SINE/Al        287 TTTTGAGACGGAGTCTCGCTCT-GTCGCCCAGGCTGGAGTGCAGTGG-CG 240

  Human_rDNA_Co      25927 YGATCTCGGCTCAC-MCCCCCTCCGCCTCCCAGGTTCARCSGATTCTCCT 25975
                           ?             -? vv            i      ?v?         
C AluSx#SINE/Al        239 CGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCT 190

  Human_rDNA_Co      25976 GCCTCAGCCTCCTGATTAGCTGGGATTACAGGCATGGGCCACCGTGCCTG 26025
                                       i  v                 ii v      ii   i 
C AluSx#SINE/Al        189 GCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCG 140

  Human_rDNA_Co      26026 GCTGATGTTTGTACTTTTAGTAGAGGCGGTGTTTTTTCCATGTGTTGGTC 26075
                              i  v      i           i   - v   iv   --      i 
C AluSx#SINE/Al        139 GCTAATTTTTGTATTTTTAGTAGAGACGG-GGTTTCACCA--TGTTGGCC 93

  Human_rDNA_Co      26076 AGGCTGGTCTCCCCCTCCCAACCTCAGGTGGTCAGCCTGCCTTAGCCTCC 26125
                                      vvv    ii          i  v   i    ii      
C AluSx#SINE/Al         92 AGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCC 43

  Human_rDNA_Co      26126 CAAAGTGCTGGGATGACA-GCGTGAGCCACC 26155
                                         v   -            
C AluSx#SINE/Al         42 CAAAGTGCTGGGATTACAGGCGTGAGCCACC 12

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 13.03
Transitions / transversions = 1.71 (24/14)
Gap_init rate = 0.03 (7 / 278), avg. gap size = 1.00 (7 / 7)


23 3.71 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 26163 26190 (6375) (CT)n#Simple_repeat 1 28 (0) m_b1s252i30 90

  Human_rDNA_Co      26163 CTCTCTCTCTCTCTCTCTCTCTCTTTCT 26190
                                                   i   
  (CT)n#Simple_          1 CTCTCTCTCTCTCTCTCTCTCTCTCTCT 28

Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.00 (0 / 27), avg. gap size = 0.0 (0 / 0)

220 17.19 1.50 2.45 Human_rDNA_Consensus_(Long)_IGS 26164 26698 (5867) (TCTT)n#Simple_repeat 1 530 (0) m_b1s252i31 90

  Human_rDNA_Co      26164 TCTCTCTCTCTCTCTCTCTCTCTTTC-TNCTTGCTNTTYGTTTTTTTGCT 26212
                              i   i   i   i   i      - ?   v  -  -v   i   -  
  (TCTT)n#Simpl          1 TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT-TT-CTTTCTTT-CT 47

  Human_rDNA_Co      26213 TCCCGT-TTTCTTGCTTTCTYTCTTTCTTT-TTTCTTTCATGCCTGNCTT 26260
                            i iv -      v      ?         -        - vi  v?   
  (TCTT)n#Simpl         48 TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC-TTTCTTTCTT 96

  Human_rDNA_Co      26261 TCTTGCTTGCTTGCTTNYTTTAATTGCTTTCTTGC-TCYTTTTTTTTTTT 26309
                               v   v   v   ??   -v  v       v - i?   i   i   
  (TCTT)n#Simpl         97 TCTTTCTTTCTTTCTTTCTTT-CTTTCTTTCTTTCTTTCTTTCTTTCTTT 145

  Human_rDNA_Co      26310 TTTTTTTTTTTTTTTTCTTTCTTTCTTGCTTNCTTNTNTTTCTTGTTTTC 26359
                           i   i   i   i              v   ?   - ?      vi    
  (TCTT)n#Simpl        146 CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT-TCTTTCTTTCTTTC 194

  Human_rDNA_Co      26360 -TNNTTTCTTTCTTTCTTTTGTTTCTTTCCTTCTTGCTTTCTTGCTTGCT 26408
                           - ??            -   v        i     v       v   v  
  (TCTT)n#Simpl        195 TTTCTTTCTTTCTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT 243

  Human_rDNA_Co      26409 TT-TTTNCTTCTTTCTTGCTTTYTTGTTTTCTTTCTTTCTTTTGTTTTTT 26457
                             -   ?i         v    ?  vi            -   v   i  
  (TCTT)n#Simpl        244 TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC-TTTCTTTCTT 292

  Human_rDNA_Co      26458 TTTTTTTTTTTTTCTTTTTTTCTTTCTTGCTTGCTTGC-TCAGTGCTTTC 26506
                            i   i   i       i          v   v   v - ivv v     
  (TCTT)n#Simpl        293 TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC 342

  Human_rDNA_Co      26507 TTGTTTTYTTTYTCTCTTTCTTTTGTTTCTTTCTTGCTTGCTTTCTTGCT 26556
                             vi   ?   ? i      -   v          v   v       v  
  (TCTT)n#Simpl        343 TTTCTTTCTTTCTTTCTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCT 391

  Human_rDNA_Co      26557 TCCTTGTTTTCTTGNTTTCTTGCTTGCTTTACTTT-TTGCTTTCTTTTTT 26605
                            i   vi      v?      v   v    -    -  v     -   i 
  (TCTT)n#Simpl        392 TTCTTTCTTTCTTTCTTTCTTTCTTTCTTT-CTTTCTTTCTTTC-TTTCT 439

  Human_rDNA_Co      26606 TTCTTTCTTTTTTTTTTTTTTTTTTTCTTTCTTGCTTTCTTTTCTTTCAT 26655
                                     i   i   i   i          v     -        v 
  (TCTT)n#Simpl        440 TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC-TTTCTTTCTT 488

  Human_rDNA_Co      26656 TCATTCCTTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTC 26698
                             v   i       -                            
  (TCTT)n#Simpl        489 TCTTTCTTTCTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTC 530

Matrix = Unknown
Transitions / transversions = 0.90 (36/40)
Gap_init rate = 0.04 (21 / 534), avg. gap size = 1.00 (21 / 21)


1171 17.39 2.19 4.49 Human_rDNA_Consensus_(Long)_IGS 26699 27017 (5548) C AluSx#SINE/Alu (0) 312 1 m_b1s356i6 91

  Human_rDNA_Co      26699 TTTCTTTCTTTCTTTCTTTCTGTTTAGGTCTTTTTGAGACAGRGTTTCAC 26748
                              i   i   i   i   i v   -----          i ?  i  i 
C AluSx#SINE/Al        312 TTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTGAGACGGAGTCTCGC 268

  Human_rDNA_Co      26749 TCTTGNTTTCCNBTGC--GAGTGCAATRATGCGATCTTGGCTCAC-GCAC 26795
                              - ?ivi  ?-v  --       i ?ii       i       -   v
C AluSx#SINE/Al        267 TCT-GTCGCCCA-GGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAA 220

  Human_rDNA_Co      26796 CTTCMCCCTCCCGGGTTYG-GCGCTTCTCCTGCCTCAGCCTCCCGATTAG 26844
                            i  ?v           ?i-   v                      v   
C AluSx#SINE/Al        219 CCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAG 170

  Human_rDNA_Co      26845 GGGGGATTACAGGGAGGCACC-CCGCGCCTGGCTTGGCTGATGTTTGTGT 26893
                           vv           viv  i  -  i    i    -----i  v     i 
C AluSx#SINE/Al        169 CTGGGATTACAGGCGCGCGCCACCACGCCCGGCT-----AATTTTTGTAT 125

  Human_rDNA_Co      26894 TTT-AGTAGGNNCCCCGTGTCTCTCCATGTTGCTCAGGCTGGTCTCCAAC 26942
                              -     i?? v-- v  i  v        vi            v   
C AluSx#SINE/Al        124 TTTTAGTAGAGACG--GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 77

  Human_rDNA_Co      26943 TCCCGACCTCCTGTGATCGGCCCACCTCGGCCTCTCGAAGTGCTGGGATG 26992
                              i      vv      v    i          i i            v
C AluSx#SINE/Al         76 TCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATT 27

  Human_rDNA_Co      26993 G-AGGSGTGAGCCACCGTGCCCGACC 27017
                           i-   ?           i     i  
C AluSx#SINE/Al         26 ACAGGCGTGAGCCACCGCGCCCGGCC 1

Matrix = 14p53g.matrix
Kimura (with divCpGMod) = 16.66
Transitions / transversions = 1.52 (32/21)
Gap_init rate = 0.06 (20 / 318), avg. gap size = 1.05 (21 / 20)


82 22.59 2.83 2.83 Human_rDNA_Consensus_(Long)_IGS 27333 27579 (4986) (TTTC)n#Simple_repeat 1 247 (0) m_b1s252i32 92

  Human_rDNA_Co      27333 TTTCTTTCTTCCTCTCCTTCGTGTTTTTCTTCCTTCCTTTCTTCCTTTCT 27382
                                     i  i  i   - v i      i   i       i      
  (TTTC)n#Simpl          1 TTTCTTTCTTTCTTTCTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCT 49

  Human_rDNA_Co      27383 CTCCTTCTTTAGGT-TTTCTTCCTCTCTTCCTNTTCCTTCTTTCTCTCTT 27431
                           i  i      vvv -      i  i    i  -   i        i    
  (TTTC)n#Simpl         50 TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT-TTCTTTCTTTCTTTCTT 98

  Human_rDNA_Co      27432 TCTGTCCTTTTTTCCTTGGTGCTTTATTTC--TCTTTCGTTCCCTGTGTT 27479
                              v  i  i    i  vv v    v    --      -  -i  v v  
  (TTTC)n#Simpl         99 TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC-TT-TCTTTCTT 146

  Human_rDNA_Co      27480 TCCTTCTTT-TTT-TTTC-CTCTCTGTTTCTTTCCCTTCTTTCCTTCGTT 27526
                             i      -   -    -i   i v       - i       i   -  
  (TTTC)n#Simpl        147 TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT-CTTTCTTTCTTTC-TT 194

  Human_rDNA_Co      27527 TCTTTC-CTCATTCTTTCTCTCTTTTTCATGTTTCTTTCCTTCCGTCTGT 27575
                                 -i  v        i     i -v v        i   iv   v 
  (TTTC)n#Simpl        195 TCTTTCTTTCTTTCTTTCTTTCTTTCT-TTCTTTCTTTCTTTCTTTCTTT 243

  Human_rDNA_Co      27576 CTTT 27579
                               
  (TTTC)n#Simpl        244 CTTT 247

Matrix = Unknown
Transitions / transversions = 1.65 (28/17)
Gap_init rate = 0.05 (13 / 246), avg. gap size = 1.08 (14 / 13)


23 14.33 2.82 4.29 Human_rDNA_Consensus_(Long)_IGS 27654 27724 (4841) (CCTC)n#Simple_repeat 1 70 (0) m_b1s252i33 93

  Human_rDNA_Co      27654 CCYCCCTCCCTCCCT-CCTYCCTCCCTTCCCCTCCCTCCTTCCCTKCCAT 27702
                             ?            -   ?      - -          i     -  v 
  (CCTC)n#Simpl          1 CCTCCCTCCCTCCCTCCCTCCCTCCC-T-CCCTCCCTCCCTCCCT-CCCT 47

  Human_rDNA_Co      27703 CTGTCTCT-TTTCCCNCCCCCCC 27724
                            iv  i  -ii    ?   i   
  (CCTC)n#Simpl         48 CCCTCCCTCCCTCCCTCCCTCCC 70

Matrix = Unknown
Transitions / transversions = 3.00 (6/2)
Gap_init rate = 0.07 (5 / 70), avg. gap size = 1.00 (5 / 5)


21 7.42 0.00 0.00 Human_rDNA_Consensus_(Long)_IGS 27817 27846 (4719) (C)n#Simple_repeat 1 30 (0) m_b1s252i35 94

  Human_rDNA_Co      27817 CCCCCCCCCCCCCCCCCCTCCCYCCCTCCC 27846
                                             i   ?   i   
  (C)n#Simple_r          1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC 30

Matrix = Unknown
Transitions / transversions = 1.00 (2/0)
Gap_init rate = 0.00 (0 / 29), avg. gap size = 0.0 (0 / 0)


17 14.87 2.56 0.00 Human_rDNA_Consensus_(Long)_IGS 27815 27853 (4712) (CTCC)n#Simple_repeat 1 40 (0) m_b1s252i34 95

  Human_rDNA_Co      27815 CTCCC-CCCCCCCCCCCCCCCTCCCYCCCTCCCTGCTTCC 27853
                                -   i   i   i       ?        v i   
  (CTCC)n#Simpl          1 CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC 40

Matrix = Unknown
Transitions / transversions = 4.00 (4/1)
Gap_init rate = 0.03 (1 / 38), avg. gap size = 1.00 (1 / 1)


341 25.83 2.38 7.94 Human_rDNA_Consensus_(Long)_IGS 28787 29543 (3022) FordPrefect#DNA/hAT-Tip100 238 955 (728) m_b1s502i5 96

  Human_rDNA_Co      28787 TGGGGTTGACCAGAGGGCCCCGGGCGCTCCGTGTGTGGCTGCGATGGTGG 28836
                                 i       v v   vi  v      v vv v  vv v    v v
  FordPrefect#D        238 TGGGGTCGACCAGATGCCCCGAGGAGCTCCGGGACTCGCGCCTATGGGGT 287

  Human_rDNA_Co      28837 CGTTTTGGGGGCAGGTGTCCGTGTCGCGCGTCGCCTGGGCCGGCGGCGTG 28886
                              iii    v vv   v   v i v  -  i-- ii  vv      v  
  FordPrefect#D        288 CGTCCCGGGGCCCCGTGGCCGGGCCCCG-GTT--CCAGGAGGGCGGCCTG 334

  Human_rDNA_Co      28887 GTCGGTGACGCGACCTCCGGCC--CCGGGGAGGTATATCTTTCGCTCCGA 28934
                            ivi i ivv  --    v  i--    v v     v        v-- i
  FordPrefect#D        335 GCGAGCGGATCG--CTCCCGCTGGCCGGCGCGGTATTTCTTTCGCG--GG 380

  Human_rDNA_Co      28935 GTCG-GC-ATTTTGGGCCGCCGGGTTGNTGCTGACACGCTGTCCTCTGGC 28982
                           i   -  - vv          i iv  ?             vii vv  i
  FordPrefect#D        381 ATCGCGCGAGATTGGGCCGCCAGAATGGTGCTGACACGCTGATTTGGGGT 430

  Human_rDNA_Co      28983 GACCTGTCGCTGGAGGTTGGGCCTCCGGATGCGCGCGGGGCTCTGGCCTA 29032
                             -  v  i  -v v  i  i v- v   i v iv i         v   
  FordPrefect#D        431 GA-CTCTCACT-CACGTCGGACA-CAGGACGAGTTCAGGGCTCTGGGCTA 477

  Human_rDNA_Co      29033 CCGGTGACCCGGCTGGCCGGCCGCGCTCCTGCTTGAGCCGCCTGCCGGGG 29082
                              ii ii  iv --    i  ---  ivv           v  -i v  
  FordPrefect#D        478 CCGACGGTCCACC--GCCGACC---CTTGGGCTTGAGCCGCATG-TGTGG 521

  Human_rDNA_Co      29083 GCCCGCGGGCCTGCTGTTCTCTCGCGCGTCGGGCGTCCCGACTCCCGGTG 29132
                                i v i v -----       v    -v i  i     - v     
  FordPrefect#D        522 GCCCGTGCGTCGG-----CTCTCGCCCGTC-CGTGTTCCGAC-CGCGGTG 564

  Human_rDNA_Co      29133 CCGGCCCGGGTCCGGGTCTCTGACCCCCCGGGGGCGGCGGGG--GGCGGC 29180
                              v -----   -     vi- v v    i           --      
  FordPrefect#D        565 CCGCC-----TCC-GGTCTAC-AGCACCCGAGGGCGGCGGGGGTGGCGGC 607

  Human_rDNA_Co      29181 GGGGCCACCGTGCCCCGTGCGCTCTCCGCTGCGGGCGCCCGGGGCGGCCG 29230
                           i  vviv iv i   i      iii  i i  v   i   i      i i
  FordPrefect#D        608 AGGCGTCCTTTACCCTGTGCGCCTCCCACCGCTGGCACCCAGGGCGGTCA 657

  Human_rDNA_Co      29231 CGRCAACCCCMCCCGCTGGCTCCGTGCCGTGCGTGTCAGGC-GTTCTCGT 29279
                            -? v     ?i    v       i   --i          -  i   --
  FordPrefect#D        658 C-CCCACCCCCTCCGCAGGCTCCGCGCC--ACGTGTCAGGCAGTCCTC-- 702

  Human_rDNA_Co      29280 CTCCGCGGGGTTGTCCGCCGCCCCTTCCCGGGGGGGGGGTTGGCCGGAGC 29329
                           -----     v  v   -    iv ii  vvv i   vv  ---  iii 
  FordPrefect#D        703 -----CGGGGGTGGCCG-CGCCTATCTCCTCCGAGGGCTTT---CGAGAC 743

  Human_rDNA_Co      29330 CGATCGGCTCGCTG-GCCGGCCGGCCGGCCTCCGCCCCGGGGCTCTTCGT 29378
                             - i vii   vi-   ii v    -- i    vi viv v iii  v 
  FordPrefect#D        744 CG-TTGCTCCGCAACGCCAACGGGCC--CTTCCGATCGATGTCCTCTCTT 790

  Human_rDNA_Co      29379 ------GATCGATGTGGTGACGTCGTGCTCT-CCGGGCCGGGNCCGAGCC 29421
                           ------                         -     i   v?iii    
  FordPrefect#D        791 GCCTCCGATCGATGTGGTGACGTCGTGCTCTCCCGGGTCGGTCTTAAGCC 840

  Human_rDNA_Co      29422 GCGACGGGCGAGGG-CGGACGTTCGTG--GCGAACGGGACCGTCNCTTCT 29468
                            i v   i      -     i   v v--     i       - ?     
  FordPrefect#D        841 GTGCCGGACGAGGGACGGACATTCCTTGCGCGAATGGGACCG-CTCTTCT 889

  Human_rDNA_Co      29469 CGCTCCGCCCNGSGGTCCCCTCGTCTCTCCTCTCCCCGCCCGCCGGCGGK 29518
                                     ?-?  v       i  v  --        i--vi     ?
  FordPrefect#D        890 CGCTCCGCCCA-CGGGCCCCTCGCCTATC--CTCCCCGCT--GTGGCGGT 934

  Human_rDNA_Co      29519 GCGTGTGGGAAGGCGTGGGGTGCGG 29543
                            i  ---       i-         
  FordPrefect#D        935 GTGT---GGAAGGCA-GGGGTGCGG 955

Matrix = 20p53g.matrix
Kimura (with divCpGMod) = 30.18
Transitions / transversions = 1.03 (91/88)
Gap_init rate = 0.09 (67 / 756), avg. gap size = 1.12 (75 / 67)


35 24.82 4.49 2.52 Human_rDNA_Consensus_(Long)_IGS 32357 32512 (53) (CGCC)n#Simple_repeat 1 159 (0) m_b1s252i36 97

  Human_rDNA_Co      32357 CGCCGCGCCCCCCCGCCCCCCCSGGC-CCCGGCCG-CCGCCC-CGCGCCC 32403
                               -     v       v   ?vv -    v   -      - v     
  (CGCC)n#Simpl          1 CGCC-CGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCC 49

  Human_rDNA_Co      32404 GCTCGCTCCCCCCGTCCGCCCGTCCG-CGGCCCGTCCGTCCGTCCG-TCG 32451
                             i   -  v    i       i   - v     i   i   i   -i  
  (CGCC)n#Simpl         50 GCCCGC-CCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCG 98

  Human_rDNA_Co      32452 TCCTCCTCGCTTG-CGGGGCGCCGGGCCCGCCCTCGCAGGC-CCCGGCCG 32499
                           i  v  -   ii - v vv    -v        v v ivv -    v   
  (CGCC)n#Simpl         99 CCCGCC-CGCCCGCCCGCCCGCC-CGCCCGCCCGCCCGCCCGCCCGCCCG 146

  Human_rDNA_Co      32500 SCCGTCCGGCCGC 32512
                           ?   i   v    
  (CGCC)n#Simpl        147 CCCGCCCGCCCGC 159

Matrix = Unknown
Transitions / transversions = 0.63 (12/19)
Gap_init rate = 0.07 (11 / 155), avg. gap size = 1.00 (11 / 11)


15 14.82 5.71 7.25 Human_rDNA_Consensus_(Long)_IGS 32366 32435 (130) (CCCCGG)n#Simple_repeat 1 69 (0) m_b1s252i37 98

  Human_rDNA_Co      32366 CCCCCGCCCC--CCCSGGCCCCGGCCGCCGCCCCGCGCCCGCTCGCTCC- 32412
                               v     --   ?          v v      -    - -v  i  -
  (CCCCGG)n#Sim          1 CCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCG-GCCC-C-GGCCCCG 47

  Human_rDNA_Co      32413 -CCCCGTCCGCCCGTCCGCGGCCC 32435
                           -     -v -    v  v      
  (CCCCGG)n#Sim         48 GCCCCG-GC-CCCGGCCCCGGCCC 69

Matrix = Unknown
Transitions / transversions = 0.14 (1/7)
Gap_init rate = 0.12 (8 / 69), avg. gap size = 1.12 (9 / 8)


35 24.82 4.49 2.52 Human_rDNA_Consensus_(Long)_IGS 32357 32512 (53) (CGCC)n#Simple_repeat 1 159 (0) m_b1s252i36 97

  Human_rDNA_Co      32357 CGCCGCGCCCCCCCGCCCCCCCSGGC-CCCGGCCG-CCGCCC-CGCGCCC 32403
                               -     v       v   ?vv -    v   -      - v     
  (CGCC)n#Simpl          1 CGCC-CGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCC 49

  Human_rDNA_Co      32404 GCTCGCTCCCCCCGTCCGCCCGTCCG-CGGCCCGTCCGTCCGTCCG-TCG 32451
                             i   -  v    i       i   - v     i   i   i   -i  
  (CGCC)n#Simpl         50 GCCCGC-CCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCG 98

  Human_rDNA_Co      32452 TCCTCCTCGCTTG-CGGGGCGCCGGGCCCGCCCTCGCAGGC-CCCGGCCG 32499
                           i  v  -   ii - v vv    -v        v v ivv -    v   
  (CGCC)n#Simpl         99 CCCGCC-CGCCCGCCCGCCCGCC-CGCCCGCCCGCCCGCCCGCCCGCCCG 146

  Human_rDNA_Co      32500 SCCGTCCGGCCGC 32512
                           ?   i   v    
  (CGCC)n#Simpl        147 CCCGCCCGCCCGC 159

Matrix = Unknown
Transitions / transversions = 0.63 (12/19)
Gap_init rate = 0.07 (11 / 155), avg. gap size = 1.00 (11 / 11)