bmsebiosimulationmodelsearchengine.pdf (7.38 MB)
BMSE Documentation and Tutorials
Biosimulation Model Search Engine (BMSE) is a web-based search engine for
finding information in biosimulation models created using CellML and stored in
the Physiome Repository Model (PMR).
Types of information include variables, mathematical equations, constants,
components, models, images, and simulation results. This work uses Composite
Annotation Search Using BERT (CASBERT) to represent queries and entities in
biosimulation models (https://doi.org/10.1101/2022.11.22.517475).
