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Tasmanian Devil rDNA unit size files

dataset
posted on 27.04.2021, 08:13 by Emma MacdonaldEmma Macdonald
analysed_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the
Tasmanian devil (NCBI accession PRJEB34649) in FASTA format used to determine rDNA unit size..

Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format.

Con_indiv_units files contain individual rDNA unit sequences extracted from nanopore reads used to generate the long and short consensus sequence in FASTA format.

Consensus_alignment files contains the alignement output in .geneious format.

Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.

align_Tasmanian_Devil_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (NCBI accession GL000220; see Agrawal & Ganley, 2018).

Average rDNA unit size was generated using the included excel spreadsheet.

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University of Auckland

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