.GZ

Analysed_Tasmainian_Devil_rDNA_Reads.fasta.gz (1.64 MB)

.GZ

TasDev_long_con_reads.fasta.gz (267.94 kB)

.GZ

Tasmanian_Devil_Long_Consensus_Individual_rDNA_units.fasta.gz (162.11 kB)

.GENEIOUS

Tasmainian_Devil_Long_Consensus_Alignement.geneious (446.67 kB)

.GZ

TasDev_short_con_reads.fasta.gz (240.84 kB)

.GZ

Tasmanina_Devil_Short_Consensus_Individual_units.fasta.gz (161.25 kB)

.GENEIOUS

Tasmainian_Devil_Short_Consensus_Alignment.geneious (419.22 kB)

.GZ

Tasmanian_Devil_Long_Consensus_Individual_rDNA_units.fasta.gz (162.11 kB)

.GENEIOUS

annotated_Tamanian_devil_long_and_short_consensus_seq.geneious (28.83 kB)

.GENEIOUS

Tasmananian_Devil_Long_Consensus_aligned_with_Tasmanian_Devil_Short_Consnesus.geneious (63.13 kB)

.GENEIOUS

align_Tasmanian_devil_long_con_with_ref.geneious (65.81 kB)

.GENEIOUS

align_Tasmanian_devil_short_con_with_ref.geneious (59.68 kB)

DATASET

Tasmanian_devil_rDNA_unit_measuring_spreadsheet.xlsx (34.26 kB)

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13 files

Tasmanian Devil rDNA unit size files

dataset

posted on 2021-04-27, 08:13 authored by Emma MacdonaldEmma Macdonald

analysed_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the

Tasmanian devil (NCBI accession PRJEB34649) in FASTA format used to determine rDNA unit size..

Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format.

Con_indiv_units files contain individual rDNA unit sequences extracted from nanopore reads used to generate the long and short consensus sequence in FASTA format.

Consensus_alignment files contains the alignement output in .geneious format.

Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.

align_Tasmanian_Devil_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (NCBI accession GL000220; see Agrawal & Ganley, 2018).

Average rDNA unit size was generated using the included excel spreadsheet.