The University of Auckland
Browse

Tasmanian Devil rDNA unit size files

dataset
posted on 2021-04-27, 08:13 authored by Emma MacdonaldEmma Macdonald
<div>analysed_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the </div><div>Tasmanian devil (NCBI accession PRJEB34649) in FASTA format used to determine rDNA unit size..</div><div><br></div><div>Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format.</div><div><br></div><div>Con_indiv_units files contain individual rDNA unit sequences extracted from nanopore reads used to generate the long and short consensus sequence in FASTA format.</div><div><br></div><div>Consensus_alignment files contains the alignement output in .geneious format.</div><div><br></div><div>Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.</div><div><br></div><div>align_Tasmanian_Devil_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (NCBI accession GL000220; see Agrawal & Ganley, 2018).</div><div><br></div><div>Average rDNA unit size was generated using the included excel spreadsheet.<br></div>

History

Publisher

University of Auckland

Usage metrics

    Faculty of Science

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC