DATASET
accessions.tsv (97.95 kB)
TEXT
class1.fasta (746.96 kB)
TEXT
class2.fasta (664.05 kB)
TEXT
class1.nexus (294.26 kB)
TEXT
class2.nexus (353.77 kB)
TEXT
class1.xml (188.27 kB)
TEXT
class2.xml (193.91 kB)
TEXT
class1.im.nexus (13.22 kB)
TEXT
class2.im.nexus (31.85 kB)
TEXT
class1.im.xml (1.5 MB)
TEXT
class2.im.xml (1.79 MB)
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Supplementary data for: enzymic recognition of amino acids drove the evolution of primordial genetic codes
Version 2 2023-10-27, 02:21
Version 1 2023-10-20, 00:26
dataset
posted on 2023-10-27, 02:21 authored by Jordan DouglasJordan Douglas, Remco BouckaertRemco Bouckaert, Charles Carter Jr, Peter WillsPeter WillsThis repository contains sequence metadata, fasta files, BEAST 2 xml files, and phylogenetic trees for our aminoacyl-tRNA synthetase (AARS) analyses.
Main article: Enzymic recognition of amino acids drove the evolution of primordial genetic codes.
Contents
- accessions.tsv: AARS sequence metadata
Sequence only trees:
- class1.fasta and class2.fasta: alignment of all the common elements of the Class I and II catalytic domains
- class1.xml and class2.xml: BEAST 2 input files. Requires BEAST 2.7.5, with the OBAMA and BICEPS packages installed
- class1.nexus and class2.nexus: maximum clade credibility trees from these XML files
Insertion module + sequence trees:
- class1.im.xml and class2.im.xml: BEAST 2 input files. Requires BEAST 2.7.5, with the OBAMA, BICEPS, and IndelDollo packages installed
- class1.im.nexus and class2.im.nexus: maximum clade credibility trees from these XML files
