S. cerevisiae 0.6X Coverage Assembly and rDNA Sequence-Selection Assembly Files

dataset

posted on 2021-04-27, 08:14 authored by Emma MacdonaldEmma Macdonald

Files containing reads selected at random from a Pacbio dataset (NCBI accession PRJEB7245) for a 0.6X Coverage assembly to generate a complete rDNA (S288C_0.66X_assembly_reads.fasta.gz), annotated assembly contig (annotated_rDNA_0.66X_assembly_contig4.geneious), lignment of the complete contig rDNA unit to a reference (U53879.1; RDN37; Chr XII, 2217.. 31308) rDNA unit (Alignment_of_0.6XCoverage_288C_assembly_with_reference).

Files containing reads selected by BLAST from a Pacbio dataset (NCBI accession PRJEB7245) to generate assembly of a complete rDNA (S288C_Sequence_Selection_assembly_reads.fasta.gz), annotated assembly contig (S288C_Sequence_Selection_assembly_method_contig1.gb), annotated individual rDNA units (S288C_seqsel_individual_rDNA_units.gb)and alignment of the individual assembled rDNA units to a reference (U53879.1; RDN37; Chr XII, 2217.. 31308) rDNA unit (Alignment_of_SeqSel_units_with_ref.geneious).

Alignments to a reference rDNA unit (isolated from a BAC clone NCBI accession U53879.1, isolation and annotations generated by Floutsakou 2013) are available for both assemblies.