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RM2_Tasmanian_Devil_Long_Consensus_IGS.fasta_1611270495.align.txt (32.04 kB)

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RM2_Tasmanian_Devil_Short_Consensus_IGS.fasta_1611270642.align.txt (46.44 kB)

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AnnotatedTasmanian_Devil_short_consensus_IGS.gb (46.67 kB)

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AnnotatedTasmanian_Devil_long_consensus_IGS.gb (55.63 kB)

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Tasmananian_Devil_Long_Consensus_aligned_with_Tasmanian_Devil_Short_Consnesus.geneious (63.16 kB)

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RepeatMasker analysis of Tasmanian devil long and short consensus sequences

dataset

posted on 2021-04-27, 08:15 authored by Emma MacdonaldEmma Macdonald

RepeatMasker outputs (RM2_Tasmanian_devil.._IGS.align) were used to annotate the long and short human rDNA consensus units (AnnotatedTasmanian_devi_rDNA_consensus_long/short.geneious) generated using nanopore reads (NCBI accession PRJEB34649).

The repeat-annotated long and short consensus IGS sequences were aligned to compare repeat number, size and position (Tasmanian_Devil_Long_Consensus_aligned_with_Tasmanian_Devil_Short_Consensus).