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Human rDNA unit size

dataset
posted on 27.04.2021, 08:14 by Emma Macdonald
Raw_read file contains nanopore reads in FASTA format analysed from a nanopore dataset (PRJNA200694) used to determine rDNA unit size for Humans.

Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the long and short consensus sequence in FASTA format.

Con_indiv_units files contain individual rDNA unit sequences extracted from nanopore reads used to generate the long and short consensus sequence in FASTA format.

Consensus_alignment files contains the alignement output in .geneious format.

Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.

align_Human_long/short_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (NCBI accession GL000220; see Agrawal & Ganley, 2018).

Average rDNA unit size was generated using the included excel spreadsheet.

History

Publisher

University of Auckland

Exports

Faculty of Science

Categories

Exports