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Golden-fronted woodpecker rDNA unit size files

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posted on 27.04.2021, 08:13 by Emma MacdonaldEmma Macdonald
GFW_rDNA_Raw_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the Golden-fronted Woodpecker (NCBI accession PRJNA598863) in FASTA format used to determine rDNA unit size.

GFW_con_reads file contains raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format for a member of the Aves lineage (Golden-fronted Woodpecker).

GFW_con_indiv_units file contains individual rDNA unit sequences extracted from nanopore reads used to generate the consensus sequence in FASTA format for a member of the Aves lineage (Golden-fronted Woodpecker).

Golden-fronted Woodpecker_consensus_alignment file contains the alignement output.

annotated_GFW_consensus file contains the annotated rDNA consensus sequence.

align_GFW_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (Genbank accession KT445934).

Average rDNA unit size was generated using the included excel spreadsheet.

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University of Auckland

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