.GZ
analysed_Diamondback_terrapin_rDNA_contigs.fasta.gz (69.23 kB)
.GZ
Diamondback_terrapin_con_contigs.fasta.gz (61.39 kB)
.GZ
Diamondback_terrapin_con_units.fasta.gz (35.47 kB)
.GENEIOUS
Diamondback_Turtle_Consensus_Alignment.geneious (96.85 kB)
.GENEIOUS
annotated_Diamondback_terrapin_ rDNA_consensus.geneious (7.31 kB)
.GENEIOUS
alignment_Diamondback_terrapin_con_with_ref_X02995.geneious (23.68 kB)
DATASET
Diamondback_terrapin_rDNA_unit_measuring_spreadsheet.xlsx (12.35 kB)
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Diamondback Terrapin rDNA unit sizes
Analysed_contigs file contains PacBio contigs from a whole genome assembly of the Diamondback terrapin(PRJNA339452) in FASTA format used to determine rDNA unit size for the Diamondback terrapin.
Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format.
Con_indiv_units files contain individual rDNA unit sequences extracted from PacBio contigs used to generate the consensus sequence in FASTA format.
Consensus_alignment files contains the alignement output in .geneious format.
Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.
align_Diamondback_terrapin_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (Genbank accession X02995).
Average rDNA unit size was generated using the included excel spreadsheet.
