Chapter5_MPRA_Supplementary_tables.xlsx (4.09 MB)
Chapter 5 Supplementary tables
This repository contains the supplementary tables for chapter 5: Mapping enhancer activity for loci marked by Parkinson’s disease variants using a Massively Parallel Reporter Assay
Supplementary table 5.1: MPRA variants that have already been tested in previous MPRA studies
Supplementary table 5.2: Additional GWAS SNPs included in the assay, an extension from table 5.1
Supplementary table 5.3: All candidate regulatory elements included in the synthesised library (Agilent technologies)
Supplementary table 5.4: Sequencing results of the inert library to determine the barcode/oligo pairings
Supplementary table 5.5: Deepsea Expecto variant prediction results for PD-associated SNPs included in the MPRA. Described fully in section 5.3.3.2
