<p dir="ltr"><b>Supplementary File 1</b>: Metadata for subset of FOCUS Trial samples selected for analysis</p><p dir="ltr"><b>Supplementary File 2</b>: Metadata for subset of Gut Bugs Trial samples selected for analysis</p><p dir="ltr"><b>Supplementary File 3</b>: Samples with low QC read counts that failed binning during MAG assembly</p><p dir="ltr"><b>Supplementary File 4</b>: Samples with no genes on high quality MAGs</p><p dir="ltr">*QC, quality control; MAG, metagenome-assembled genome</p><p dir="ltr"><br></p>