uCT and histology datasets

uCT and histology datasets

General information

The rat was in the oestrus phase of its cycle. All slices are along the transverse plane. The organ was stained with PhosphoTungstic Acid (PTA) and the histology slices used Hematoxylin and Eosin (HE) stain.

Contents

• The AWA015_PTA_1_Rec_Trans.zip archive contains the original uCT dataset of the full rat uterus. The organ was stained with PTA. The archive contains the .bmp files and the log file.
• The AWA015_PTA_1_Rec_Trans_muscle_segmentation.zip archive contains the segmentation masks from the full rat uterus slices (png format).
• The AWA015_PTA_2_Cvx_Rec_Trans.zip archive contains the original uCT dataset of a segment located in the cervix of the rat uterus. The archive contains the .bmp files and the log file.
• The AWA015_PTA_2_Cev_Rec_Trans.zip archive contains the original uCT dataset of a segment located near the cervix of the left horn of the rat uterus. The archive contains the .bmp files and the log file.
• The AWA015_PTA_2_Cen_Rec_Trans.zip archive contains the original uCT dataset of a segment located in the centre of the left horn of the rat uterus. The archive contains the .bmp files and the log file.
• The AWA015_PTA_2_Ova_Rec_Trans.zip archive contains the original uCT dataset of a segment located near the ovaries of the left horn of the rat uterus. The archive contains the .bmp files and the log file.
• The AWA015_PTA_2_Ova_Rec_Trans_muscle_segmentation.zip archive contains the segmentation masks from the slices of the segment located near the ovaries of the left horn of the rat uterus (png format). The segmentation masks have two labels, one for the circumferential muscles and two for the longitudinal muscles.
• The downsampled.zip archive contains the downsampled versions of the AWA015_PTA_1_Rec_Trans and AWA015_PTA_2_Ova_Rec_Trans images (png format) as nii.gz archives (NIfTI format) as well as the muscle segmentation masks (png format) as nii.gz archives and downsampling log files. The images were downsampled by a factor of 4 relative to the original datasets. The segmentation masks of AWA015_PTA_2_Ova_Rec_Trans have two labels, one for the circumferential muscles and two for the longitudinal muscles.
• The AWA015_histology.nii.gz archive contains the histology slices (png format) of different locations (cervix, cervical end, centre, and ovarian end of the right horn in that order) in the rat uterus. The slices were stained with Hematoxylin and Eosin (HE) stain.
• The AWA015_histology_muscle_segmentation.nii.gz archive contains the masks of the muscle segmentation of the histology slices (png format).